Novosphingobium fuchskuhlense (DSM 25065, CCM 7978, CCUG 61508)

Name: Novosphingobium fuchskuhlense (DSM 25065, CCM 7978, CCUG 61508)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23266

Type strain

Strain Designation FNE08-7

Culture col. no. DSM 25065 CCM 7978 CCUG 61508 FNE08-7

NCBI tax ID(s) 1117702

Special Collections DSMZ CCUG Literature strains

History DSMZ <- S. P. Glaeser, Justus-Liebig-Universität, Giessen, Germany; FNE08-7

Links

Novosphingobium fuchskuhlense FNE08-7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from subsurface water of a humic acid rich bog lake.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398390

DSM 25065,CCUG 61508

@ref 20215

Last LPSN update 2026-05-29 08:30:25

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Novosphingobium

Species Novosphingobium fuchskuhlense

Full scientific name Novosphingobium fuchskuhlense Glaeser et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30724	negative	1.7 µm	0.8 µm	rod-shaped
125438	negative					95.838

Colony morphology

62645

Incubation period2-3 days

Pigmentation

30724

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19230	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19230	positive	growth	28
30724	positive	growth	04-32
30724	positive	optimum	25
62645	positive	growth	20

Culture pH

@ref	Ability	Type	PH
30724	positive	optimum	6.5
30724	positive	growth	05-07

Physiology and metabolism

Oxygen tolerance

62645

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.841
125439		93.994

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30724	17057 ChEBI	cellobiose	+	carbon source
30724	17234 ChEBI	glucose	+	carbon source
30724	27570 ChEBI	histidine	+	carbon source
30724	24996 ChEBI	lactate	+	carbon source
30724	15361 ChEBI	pyruvate	+	carbon source
30724	26546 ChEBI	rhamnose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30724	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Wetland (Swamp)
#Condition	#Acidic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date
19230	subsurface water of a humic acid rich bog lake	Stechlin, Lake Große Fuchskuhle, north eastern basin	Germany	DEU	Europe	53.1667	13.0333 53.1667/13.0333
62645	Surface water	Lake Grosse Fuchskuhle	Germany	DEU	Europe			2008-06-20

Taxonmaps

69479

Global distribution of 16S sequence JN399172 (>99% sequence identity) for Novosphingobium from Microbeatlas

Aquatic Samples	3763
Soil Samples	173
Animal Samples	384
Plant Samples	117
Total Samples	4437

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19230	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM151907v1 assembly for Novosphingobium fuchskuhlense FNE08-7	scaffold	GCA_001519075	1117702.3	2775506978	1117702	75.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19230	Novosphingobium fuchskuhlense strain FNE08-7 16S ribosomal RNA gene, partial sequence	JN399172	1338		1117702

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM151907v1 assembly for Novosphingobium fuchskuhlense FNE08-7
BV-BRC: 1117702.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	83.51	no
125439	gram_stain	BacteriaNetⓘ	negative	89.83	no
125439	motility	BacteriaNetⓘ	yes	69.65	no
125439	spore_formation	BacteriaNetⓘ	no	93.99	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Novosphingobium fuchskuhlense FNE08-7
NCBI: GCA_001519075.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.84	yes
125438	anaerobic	anaerobicⓘ	no	93.77	no
125438	aerobic	aerobicⓘ	yes	88.37	yes
125438	spore-forming	spore-formingⓘ	no	90.84	no
125438	thermophilic	thermophileⓘ	no	96.02	yes
125438	flagellated	motile2+ⓘ	yes	62.61	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novosphingobium fuchskuhlense sp. nov., isolated from the north-east basin of Lake Grosse Fuchskuhle.	Glaeser SP, Bolte K, Martin K, Busse HJ, Grossart HP, Kampfer P, Glaeser J	Int J Syst Evol Microbiol	10.1099/ijs.0.043083-0	2012

References

#19230	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25065
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27055	IJSEM 586 2013 ( DOI 10.1099/ijs.0.043083-0 , PubMed 22544783 )
#30724	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27055
#62645	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61508
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Novosphingobium fuchskuhlense (DSM 25065, CCM 7978, CCUG 61508)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001519075

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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