Name: Litoreibacter albidus DSM 26922
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23240

Type strain:

Species: Litoreibacter albidus

Culture col. no.: DSM 26922, JCM 16493, NRIC 0773, KMM 3851

Strain history: N. Tanaka <-- L. A. Romanenko Sh18 (=KMM 3851).

NCBI tax ID(s): 670155 (species)

SI-ID 406748

DSM 26922

Section

Litoreibacter albidus DSM 26922 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from internal tissues of marine snail specimen Umbonium costatum collected from shallow sediments.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Litoreibacter*
	Species	**Litoreibacter albidus**
	Full Scientific Name (LPSN)	Litoreibacter albidus Romanenko et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29724]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #29724]	Cell length	1.9 µm

[Ref.: #29724]	Cell width	0.5 µm

[Ref.: #29724]	Cell shape	rod-shaped

[Ref.: #29724]	Motility	no

[Ref.: #19111]

Incubation period

2-3 days

[Ref.: #29724]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19111]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #19111]

Culture medium growth

[Ref.: #19111]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19111]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19111]	growth	25 °C
[Ref.: #29724]	growth	04-37 °C
[Ref.: #29724]	optimum	26.5 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #19111]	Temperature range	mesophilic
[Ref.: #29724]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29724]			optimum	7
[Ref.: #29724]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29724]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29724]		NaCl		growth	0.5-8	%
[Ref.: #29724]		NaCl		optimum	2.5	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29724]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #29724]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #29724]	mannitol ChEBI	+	carbon source
[Ref.: #29724]	melibiose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #29724]	proline ChEBI	+	carbon source
[Ref.: #29724]	propionate ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29724]		hydrogen sulfide ChEBI	yes
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #29724]	acid phosphatase	+	3.1.3.2
[Ref.: #29724]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #19111]	catalase	+	1.11.1.6
[Ref.: #29724]	catalase	+	1.11.1.6
[Ref.: #29724]	cytochrome oxidase	+	1.9.3.1
[Ref.: #19111]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #19111]	23966	-	-	-	-	-	+	-	+	+/-	-	-	-	-	-	+	-	-	+	+	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19111]	Sample type/isolated from	internal tissues of marine snail specimen Umbonium costatum collected from shallow sediments
[Ref.: #19111]	Host species	Umbonium costatum
[Ref.: #19111]	Geographic location (country and/or sea, region)	Sea of Japan
[Ref.: #19111]	Country	Russia
[Ref.: #19111]	Country ISO 3 Code	RUS
[Ref.: #19111]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Internal tissues of a marine snail specimen (Umbonium costatum) collected from shallow sediments of the Sea of Japan
[Ref.: #67770]	Host species	Umbonium costatum
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	-	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB518881 (>99% sequence identity) for Litoreibacter from Microbeatlas

Aquatic Samples	1213
Soil Samples	58
Animal Samples	106
Plant Samples	17
Total Samples	1394

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19111]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19111]	Litoreibacter albidus gene for 16S ribosomal RNA, partial sequence	AB518881	1440	ENA	670155 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Litoreibacter albidus DSM 26922	GCA_900107015	contig	GenBank	670155 tax ID
[Ref.: #66792]	Litoreibacter albidus strain DSM 26922	670155.3	wgs	PATRIC	670155 tax ID	*
[Ref.: #66792]	Litoreibacter albidus DSM 26922	2617270827	draft	JGI IMG/M	670155 tax ID	*

[Ref.: #19111]	GC-content	60.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29724]	GC-content	60.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Litoreibacter albidus strain DSM 26922 PATRIC: 670155.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Litoreibacter albidus strain DSM 26922 PATRIC: 670155.3
[Ref.: #69480]	gram-positive	no	98.694	yes
[Ref.: #69480]	anaerobic	no	99.336	yes
[Ref.: #69480]	halophile	yes	82.36	no
[Ref.: #69480]	spore-forming	no	97.076	no
[Ref.: #69480]	glucose-util	yes	65.39	no
[Ref.: #69480]	thermophile	no	96.545	yes
[Ref.: #69480]	flagellated	no	89.234	no
[Ref.: #69480]	motile	no	65.468	no
[Ref.: #69480]	aerobic	yes	95.615	yes
[Ref.: #69480]	glucose-ferment	no	92.066	no

Availability in culture collections External links

[Ref.: #19111]

Culture collection no.

DSM 26922, JCM 16493, NRIC 0773, KMM 3851

[Ref.: #87466]

SI-ID 406748

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Harenicola maris gen. nov., sp. nov. isolated from the Sea of Japan shallow sediments.	Romanenko LA, Kurilenko VV, Chernysheva NY, Tekutyeva LA, Velansky PV, Svetashev VI, Isaeva MP	Arch Microbiol	10.1007/s00203-021-02360-0	2021	*
Phylogeny	Litoreibacter roseus sp. nov., a novel bacteriochlorophyll a-containing bacterium.	Kanamuro M, Sato-Takabe Y, Muramatsu S, Hirose S, Muramatsu Y, Takaichi S, Hanada S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004679	2021	*
Phylogeny	Litoreibacter albidus gen. nov., sp. nov. and Litoreibacter janthinus sp. nov., members of the class Alphaproteobacteria isolated from the seashore.	Romanenko LA, Tanaka N, Frolova GM, Svetashev VI, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.019513-0	2010	*

References

#19111

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26922

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29724

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26107 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87466

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406748.1 )

#26107

IJSEM 148 2011 ( DOI 10.1099/ijs.0.019513-0 , PubMed 20173002 )

* These data were automatically processed and therefore are not curated

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Litoreibacter albidus strain DSM 26922

Litoreibacter albidus strain DSM 26922

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