Name: Maribius pelagius B5-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23234

Type strain:

Species: Maribius pelagius

Strain Designation: B5-6

Culture col. no.: DSM 26893, JCM 14009, KCCM 42336, CIP 109553

Strain history: J.-C. Cho B5-6.

NCBI tax ID(s): 387096 (species)

Section

Maribius pelagius B5-6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from surface water.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	Maribius
	Species	Maribius pelagius
	Full Scientific Name (PNU)	Maribius pelagius Choi et al. 2007

Synonym

"Palleronia pelagia"

Information on morphological and physiological properties Morphology

[Ref.: #31863]	Gram stain	negative
[Ref.: #31863]	Cell length	2.05 µm
[Ref.: #31863]	Cell width	0.6 µm
[Ref.: #31863]	Cell shape	rod-shaped
[Ref.: #31863]	Motility	no

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #19055]

Incubation period

2-3 days

[Ref.: #31863]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19055]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #19055]

Culture medium growth

[Ref.: #19055]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19055]

Culture medium composition

expand / minimize

[Ref.: #33308]

Culture medium

Marine agar (MA)

[Ref.: #33308]

Culture medium growth

[Ref.: #33308]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19055]	growth	30 °C
[Ref.: #31863]	growth	10-40 °C
[Ref.: #31863]	optimum	32.5 °C
[Ref.: #33308]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #19055]	Temperature range	mesophilic
[Ref.: #31863]	Temperature range	mesophilic
[Ref.: #33308]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31863]			optimum	7.5
[Ref.: #31863]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31863]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31863]		NaCl		growth	02-15	%
[Ref.: #31863]		NaCl		optimum	8.5	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31863]	arginine ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31863]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31863]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #31863]	ethanol ChEBI	+	carbon source
[Ref.: #31863]	fructose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31863]	glucose ChEBI	+	carbon source
[Ref.: #31863]	glycerol ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31863]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #31863]	pyruvate ChEBI	+	carbon source
[Ref.: #31863]	ribose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #31863]	tween 80 ChEBI	+	carbon source
[Ref.: #31863]	urea ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31863]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #19055]	catalase	+	1.11.1.6
[Ref.: #31863]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31863]	cytochrome oxidase	+	1.9.3.1
[Ref.: #19055]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #31863]	urease	+	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #19055]	22339	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.
[Ref.: #19055]	21351	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19055]	6385	-	+/-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19055]	Sample type/isolated from	surface water
[Ref.: #19055]	Geographic location (country and/or sea, region)	Sargasso Sea

[Ref.: #67770]	Sample type/isolated from	Surface water of the Sargasso Sea
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ514326 (>99% sequence identity) for Maribius from Microbeatlas

Aquatic Samples	2211
Soil Samples	183
Animal Samples	107
Plant Samples	43
Total Samples	2544

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19055]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19055]	Maribius pelagius strain B5-6 16S ribosomal RNA gene, partial sequence	DQ514326	1405	ENA	387096 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Maribius pelagius DSM 26893	GCA_900110115	contig	GenBank	387096 tax ID
[Ref.: #66792]	Maribius pelagius strain DSM 26893	387096.5	wgs	PATRIC	387096 tax ID	*
[Ref.: #66792]	Maribius pelagius DSM 26893	2616644821	draft	JGI IMG/M	387096 tax ID	*

[Ref.: #19055]	GC-content	66.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31863]	GC-content	66.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Maribius pelagius strain DSM 26893 PATRIC: 387096.5
[Ref.: #69480]	anaerobic	no	96.709	no
[Ref.: #69480]	gram-positive	no	99.996	yes
[Ref.: #69480]	spore-forming	no	99.99	yes
[Ref.: #69480]	thermophile	no	99.488	yes
[Ref.: #69480]	motile	yes	55.056	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Maribius pelagius strain DSM 26893 PATRIC: 387096.5
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #19055]

Culture collection no.

DSM 26893, JCM 14009, KCCM 42336, CIP 109553

[Ref.: #20218]

Associated Passport(s) in StrainInfo

690038, 690039

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Profundibacterium mesophilum gen. nov., sp. nov., a novel member in the family Rhodobacteraceae isolated from deep-sea sediment in the Red Sea, Saudi Arabia.	Lai PY, Miao L, Lee OO, Liu LL, Zhou XJ, Xu Y, Al-Suwailem A, Qian PY	Int J Syst Evol Microbiol	10.1099/ijs.0.041525-0	2012	*
Phylogeny	Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging to the Roseobacter clade.	Choi DH, Cho JC, Lanoil BD, Giovannoni SJ, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.64552-0	2007	*

References

#19055

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26893

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31863

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28123 (see below)

#33308 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28123

IJSEM 270 2007 ( DOI 10.1099/ijs.0.64552-0 , PubMed 17267963 )

* These data were automatically processed and therefore are not curated

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Maribius pelagius strain DSM 26893

Maribius pelagius strain DSM 26893

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