Salipiger bermudensis (DSM 26914, JCM 13377, KCTC 12554)

Name: Salipiger bermudensis (DSM 26914, JCM 13377, KCTC 12554)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23230

Type strain

Culture col. no. DSM 26914 JCM 13377 KCTC 12554 HTCC 2601 CIP 109257

NCBI tax ID(s) 344736

Special Collections DSMZ JCM KCTC CIP Literature strains

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Salipiger bermudensis DSM 26914 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from Bermuda Atlantic Time Series Station.

Gram-negative rod-shaped facultative anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 290996

JCM 13377,KCTC 12554,CIP 109257,DSM 26914

@ref 20215

Last LPSN update 2025-12-16 09:52:37

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Salipiger

Species Salipiger bermudensis

Full scientific name Salipiger bermudensis (Cho and Giovannoni 2006) Wirth and Whitman 2018

Synonyms (1)

Pelagibaca bermudensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31691	negative	1.2-2.3 µm	0.6-1.1 µm	rod-shaped
67771	negative

Colony morphology

19034

Incubation period2-3 days

Pigmentation

31691

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19034	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19034	positive	growth	30	mesophilic
31691	positive	growth	10-40
31691	positive	optimum	30-33	mesophilic
67770	positive	growth	25	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31691	positive	optimum	8.5
31691	positive	growth	5-10.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31691	facultative anaerobe
67771	aerobe

Spore formation

31691

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31691	NaCl	positive	growth	0.25-15 %
31691	NaCl	positive	optimum	3 %

Observation

@ref	Observation
31691	aggregates in chains
67770	quinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31691	16449 ChEBI	alanine	+	carbon source
31691	22599 ChEBI	arabinose	+	carbon source
31691	29016 ChEBI	arginine	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
31691	17057 ChEBI	cellobiose	+	carbon source
31691	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
31691	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
31691	15740 ChEBI	formate	+	carbon source
31691	28757 ChEBI	fructose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
31691	24265 ChEBI	gluconate	+	carbon source
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
31691	17234 ChEBI	glucose	+	carbon source
31691	29987 ChEBI	glutamate	+	carbon source
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
31691	25017 ChEBI	leucine	+	carbon source
31691	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
31691	17306 ChEBI	maltose	+	carbon source
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
31691	29864 ChEBI	mannitol	+	carbon source
31691	37684 ChEBI	mannose	+	carbon source
31691	28053 ChEBI	melibiose	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
31691	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
31691	18257 ChEBI	ornithine	+	carbon source
31691	26271 ChEBI	proline	+	carbon source
31691	26546 ChEBI	rhamnose	+	carbon source
31691	33942 ChEBI	ribose	+	carbon source
31691	17992 ChEBI	sucrose	+	carbon source
31691	27082 ChEBI	trehalose	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
19034	catalase	+	1.11.1.6
31691	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31691	cytochrome oxidase	+	1.9.3.1
19034	cytochrome-c oxidase	+	1.9.3.1
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19034	-	+/-	+/-	-	-	+/-	-	-	-	-	-	+/-	-	-	-	+	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
19034	-	-	-	-	+	+	-	+	+	+	+/-	+	-	+	+	-	+	+	+	-	not determinedn.d.
19034	-	-	-	-	+	+	-	-	+	+	+/-	+	-	+	+	-	+/-	+	+	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#House

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Geographic location
19034	Bermuda Atlantic Time Series Station				Western Sargasso Sea
67770	The Bermuda Atlantic Time Series Station in the western Sargasso Sea	Atlantic Ocean
67771	From seawater	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ178660 (>99% sequence identity) for Salipiger bermudensis from Microbeatlas

Aquatic Samples	1103
Soil Samples	34
Animal Samples	122
Plant Samples	4
Total Samples	1263

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19034	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19034	Pelagibaca bermudensis strain HTCC2601 16S ribosomal RNA gene, partial sequence	DQ178660	1460		314265

GC content

@ref	GC-content (mol%)	Method
31691	65.4
67770	65-65.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Distribution analysis of hydrogenases in surface waters of marine and freshwater environments.	Barz M, Beimgraben C, Staller T, Germer F, Opitz F, Marquardt C, Schwarz C, Gutekunst K, Vanselow KH, Schmitz R, LaRoche J, Schulz R, Appel J.	PLoS One	10.1371/journal.pone.0013846	2010
Genetics	Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera.	Thrash JC, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ	J Bacteriol	10.1128/JB.00873-10	2010
Phylogeny	Pelagibaca bermudensis gen. nov., sp. nov., a novel marine bacterium within the Roseobacter clade in the order Rhodobacterales.	Cho JC, Giovannoni SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64063-0	2006
Phylogeny	Pelagibaca abyssi sp. nov., of the family Rhodobacteraceae, isolated from deep-sea water.	Lin Y, Tang K, Li S, Liu K, Sun J, Jiao N	Antonie Van Leeuwenhoek	10.1007/s10482-014-0219-z	2014

References

#19034	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26914
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31691	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27968 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salipiger bermudensis (DSM 26914, JCM 13377, KCTC 12554)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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