Pannonibacter indicus (DSM 23407, JCM 16851, LMG 25769)

Name: Pannonibacter indicus (DSM 23407, JCM 16851, LMG 25769)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23226

Type strain

Strain Designation HT23

Culture col. no. DSM 23407 JCM 16851 LMG 25769 HT23

NCBI tax ID(s) 466044

Special Collections DSMZ JCM

History <- S. K. Das, Inst. Life Sci., Bhubaneswar, India; HT23 S. K. Das HT23.

Links

Pannonibacter indicus HT23 is a bacterium that was isolated from hot spring sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 369747

LMG 25769,JCM 16851,DSM 23407

@ref 20215

Last LPSN update 2026-02-09 11:23:42

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Stappiaceae

Genus Pannonibacter

Species Pannonibacter indicus

Full scientific name Pannonibacter indicus corrig. Bandyopadhyay et al. 2013

Synonyms (1)

Pannonibacter indica

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439	negative	99.8

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		94.345
125439		99.1

Observation

67770

Observationquinones: Q-10, Q-9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19211	hot spring sediment	Orissa, Athamallik	India	IND	Asia
67770	Hot spring sediment sample collected from Athamallik	Orissa	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF608175 (>99% sequence identity) for Pannonibacter from Microbeatlas

Aquatic Samples	5053
Soil Samples	2317
Animal Samples	4774
Plant Samples	650
Total Samples	12794

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19211	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM141822v1 assembly for Pannonibacter indicus DSM 23407	scaffold	GCA_001418225	466044.4	2615840614	466044	72.08
67770	JGI assembly for Pannonibacter indicus DSM 23407	scaffold	GCA_001517385			466044	71.44

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19211	Pannonibacter indicus strain HT23 16S ribosomal RNA gene, partial sequence	EF608175	1405		466044

GC content

@ref	GC-content (mol%)	Method
19211	63.3
67770	63.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pannonibacter indicus DSM 23407
NCBI: GCA_001517385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	yes	82.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	86.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pannonibacter indicus strain DSM 23407
PATRIC: 466044.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	91.93	no
125438	spore-forming	spore-formingⓘ	no	94.35	no
125438	aerobic	aerobicⓘ	yes	81.09	no
125438	thermophilic	thermophileⓘ	no	96.99	yes
125438	flagellated	motile2+ⓘ	yes	74.66	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Genomic insights of Pannonibacter phragmitetus strain 31801 isolated from a patient with a liver abscess.	Zhou Y, Jiang T, Hu S, Wang M, Ming D, Chen S.	Microbiologyopen	10.1002/mbo3.515	2017
Genetics	Draft Genome Sequence of Pannonibacter indicus Strain HT23(T) (DSM 23407(T)), a Highly Arsenate-Tolerant Bacterium Isolated from a Hot Spring in India.	Bandyopadhyay S, Whitman WB, Das SK	Genome Announc	10.1128/genomeA.00283-17	2017
Metabolism	Functional analysis of ars gene cluster of Pannonibacter indicus strain HT23(T) (DSM 23407(T)) and identification of a proline residue essential for arsenate reductase activity.	Bandyopadhyay S, Das SK	Appl Microbiol Biotechnol	10.1007/s00253-016-7390-2	2016
Genetics	Pannonibacter anstelovis sp. nov. Isolated from Two Cases of Bloodstream Infections in Paediatric Patients.	Castellana S, De Laurentiis V, Bianco A, Del Sambro L, Grassi M, De Leonardis F, Derobertis AM, De Carlo C, Sparapano E, Mosca A, Stolfa S, Ronga L, Santacroce L, Chironna M, Parisi M, Capozzi L, Parisi A.	Microorganisms	10.3390/microorganisms12040799	2024
Phylogeny	Pannonibacter carbonis sp. nov., isolated from coal mine water.	Xi L, Qiao N, Liu D, Li J, Zhang J, Liu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002794	2018
Phylogeny	Pannonibacter indica sp. nov., a highly arsenate-tolerant bacterium isolated from a hot spring in India.	Bandyopadhyay S, Schumann P, Das SK	Arch Microbiol	10.1007/s00203-012-0840-z	2012

References

#19211	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23407
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Pannonibacter indicus (DSM 23407, JCM 16851, LMG 25769)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001418225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media