Name: Pannonibacter indicus HT23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23226

Type strain:

Species: Pannonibacter indicus

Strain Designation: HT23

Culture col. no.: DSM 23407, JCM 16851, LMG 25769

Strain history: S. K. Das HT23.

NCBI tax ID(s): 466044 (species)

SI-ID 369747

LMG 25769, JCM 16851, DSM 23407

Section

Pannonibacter indicus HT23 is a mesophilic, Gram-negative bacterium that was isolated from hot spring sediment.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Stappiaceae*
	Genus	*Pannonibacter*
	Species	**Pannonibacter indicus**
	Full Scientific Name (LPSN)	Pannonibacter indicus corrig. Bandyopadhyay et al. 2013

Synonym

Pannonibacter indica

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.994

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.919

[Ref.: #67770]

Observation

quinones: Q-10, Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19211]	Sample type/isolated from	hot spring sediment
[Ref.: #19211]	Geographic location (country and/or sea, region)	Orissa, Athamallik
[Ref.: #19211]	Country	India
[Ref.: #19211]	Country ISO 3 Code	IND
[Ref.: #19211]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Hot spring sediment sample collected from Athamallik
[Ref.: #67770]	Geographic location (country and/or sea, region)	Orissa
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF608175 (>99% sequence identity) for Pannonibacter from Microbeatlas

Aquatic Samples	5053
Soil Samples	2317
Animal Samples	4774
Plant Samples	650
Total Samples	12794

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19211]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19211]	Pannonibacter indicus strain HT23 16S ribosomal RNA gene, partial sequence	EF608175	1405	ENA	466044 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pannonibacter indicus DSM 23407	GCA_001517385	scaffold	GenBank	466044 tax ID
[Ref.: #67770]	Pannonibacter indicus DSM 23407	GCA_001418225	scaffold	GenBank	466044 tax ID
[Ref.: #66792]	Pannonibacter indicus strain DSM 23407	466044.4	wgs	PATRIC	466044 tax ID	*
[Ref.: #66792]	Pannonibacter indicus DSM 23407	2615840614	draft	JGI IMG/M	466044 tax ID	*

[Ref.: #19211]	GC-content	63.3 mol%
[Ref.: #67770]	GC-content	63.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pannonibacter indicus DSM 23407 NCBI: GCA_001418225.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pannonibacter indicus strain DSM 23407 PATRIC: 466044.4
[Ref.: #69480]	gram-positive	no	98.789	no
[Ref.: #69480]	anaerobic	no	97.006	no
[Ref.: #69480]	halophile	no	67.058	no
[Ref.: #69480]	spore-forming	no	95.577	no
[Ref.: #69480]	glucose-util	yes	90.871	no
[Ref.: #69480]	aerobic	yes	86.702	no
[Ref.: #69480]	flagellated	yes	71.04	no
[Ref.: #69480]	thermophile	no	93.886	yes
[Ref.: #69480]	motile	yes	90.542	no
[Ref.: #69480]	glucose-ferment	no	90.921	no

Availability in culture collections External links

[Ref.: #19211]

Culture collection no.

DSM 23407, JCM 16851, LMG 25769

[Ref.: #87452]

SI-ID 369747

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pannonibacter carbonis sp. nov., isolated from coal mine water.	Xi L, Qiao N, Liu D, Li J, Zhang J, Liu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002794	2018	*
Phylogeny	Pannonibacter indica sp. nov., a highly arsenate-tolerant bacterium isolated from a hot spring in India.	Bandyopadhyay S, Schumann P, Das SK	Arch Microbiol	10.1007/s00203-012-0840-z	2012	*
Genetics	Draft Genome Sequence of Pannonibacter indicus Strain HT23(T) (DSM 23407(T)), a Highly Arsenate-Tolerant Bacterium Isolated from a Hot Spring in India.	Bandyopadhyay S, Whitman WB, Das SK	Genome Announc	10.1128/genomeA.00283-17	2017	*
Metabolism	Functional analysis of ars gene cluster of Pannonibacter indicus strain HT23(T) (DSM 23407(T)) and identification of a proline residue essential for arsenate reductase activity.	Bandyopadhyay S, Das SK	Appl Microbiol Biotechnol	10.1007/s00253-016-7390-2	2016	*

References

#19211

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23407

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87452

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID369747.1 )

* These data were automatically processed and therefore are not curated

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Pannonibacter indicus DSM 23407

Pannonibacter indicus strain DSM 23407

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