Name: Pseudonocardia rhizophila DSM 45381
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23217

Type strain:

Species: Pseudonocardia rhizophila

Culture col. no.: DSM 45381, CCTCC AA 209043, YIM 67013

Strain history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 67013 <- J. Li, Yunnan Univ., Kunming

NCBI tax ID(s): 709987 (species)

SI-ID 381181

DSM 45381, LMG 28634

Section

Pseudonocardia rhizophila DSM 45381 is a mesophilic bacterium that was isolated from rhizosphere soil of Tripterygium wilfordii Hook. f..

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	**Pseudonocardia rhizophila**
	Full Scientific Name (LPSN)	Pseudonocardia rhizophila Li et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19159]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19159]

Culture medium growth

[Ref.: #19159]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19159]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19159]			growth	28 °C

[Ref.: #19159]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19159]	Sample type/isolated from	rhizosphere soil of Tripterygium wilfordii Hook. f.
[Ref.: #19159]	Host species	Tripterygium wilfordii
[Ref.: #19159]	Geographic location (country and/or sea, region)	Yunnan province
[Ref.: #19159]	Country	China
[Ref.: #19159]	Country ISO 3 Code	CHN
[Ref.: #19159]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU322368 (>99% sequence identity) for Pseudonocardia from Microbeatlas

Aquatic Samples	13
Soil Samples	366
Animal Samples	34
Plant Samples	41
Total Samples	454

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19159]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19159]	Pseudonocardia rhizophila strain YIM 67013 16S ribosomal RNA gene, partial sequence	GU322368	1516	ENA	709987 tax ID

[Ref.: #19159]

GC-content

69.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #19159]

Culture collection no.

DSM 45381, CCTCC AA 209043, YIM 67013

[Ref.: #87445]

SI-ID 381181

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia rhizophila sp. nov., a novel actinomycete isolated from a rhizosphere soil.	Li J, Zhao GZ, Huang HY, Zhu WY, Lee JC, Kim CJ, Xu LH, Zhang LX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-010-9431-7	2010	*

References

#19159

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45381

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87445

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381181.1 )

* These data were automatically processed and therefore are not curated

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