Lentzea jiangxiensis (DSM 45855, CGMCC 4.6609, NBRC 106680)

Name: Lentzea jiangxiensis (DSM 45855, CGMCC 4.6609, NBRC 106680)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23216

Type strain

Strain Designation FXJ1.034

Culture col. no. DSM 45855 CGMCC 4.6609 NBRC 106680 FXJ1.034

NCBI tax ID(s) 641025

Special Collections DSMZ Wink compendium Literature strains

History <- NBRC; NBRC 106680 <- CGMCC; CGMCC 4.6609

Links

Lentzea jiangxiensis FXJ1.034 is a spore-forming bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399618

NBRC 106680,DSM 45855

@ref 20215

Last LPSN update 2026-02-09 11:23:42

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Lentzea

Species Lentzea jiangxiensis

Full scientific name Lentzea jiangxiensis Li et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.6
125438		91.5

Colony morphology

@ref	Colony color	Medium used
69447	Green brown (8000)	ISP 2
69447	Brown beige (1011)	suter with tyrosine
69447	Beige (1001), signal yellow (1003)	ISP 5
69447	Maize yellow (1006)	ISP 3
69447	Sand yellow (1002)	ISP 4
69447	Sand yellow (1002)	suter without tyrosine
69447	Sand yellow (1002), Brown beige (1011)	ISP 7
69447	Sand yellow (1002), maize yellow (1006)	ISP 6

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69447	Aerial mycelium	Signal white (9003)	ISP 2
69447	Aerial mycelium	Pure white (9010)	ISP 3
69447	Aerial mycelium		ISP 4
69447	Aerial mycelium		ISP 5
69447	Aerial mycelium		ISP 6
69447	Aerial mycelium		ISP 7
69447	Aerial mycelium		suter with tyrosine
69447	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Production	Color	Name
30341
69447		Ochre yellow (1024)	soluble pigment

Multimedia

@ref:	69447
multimedia content:	DSM_45855_image3.jpeg
multimedia.multimedia content:	DSM_45855_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69447
multimedia content:	DSM_45855_image4.jpeg
multimedia.multimedia content:	DSM_45855_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19179	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19179	positive	growth	28
30341	positive	growth	10-37
30341	positive	optimum	24

Culture pH

@ref	Ability	Type	PH	PH range
30341	positive	optimum	6
30341	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.557
125439	obligate aerobe	99.3

Spore formation

30341

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30341	NaCl	positive	growth	6 %
69447	NaCl	positive	growth	0-5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69447	22599 ChEBI	arabinose	+/-	growth
30341	22599 ChEBI	arabinose	+	carbon source
30341	17057 ChEBI	cellobiose	+	carbon source
69447	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
30341	23652 ChEBI	dextrin	+	carbon source
30341	4853 ChEBI	esculin	+	hydrolysis
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
30341	28757 ChEBI	fructose	+	carbon source
69447	28757 ChEBI	fructose	+	growth
30341	28260 ChEBI	galactose	+	carbon source
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
30341	17234 ChEBI	glucose	+	carbon source
69447	17234 ChEBI	glucose	+	growth
30341	17754 ChEBI	glycerol	+	carbon source
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69447	17268 ChEBI	inositol	+	growth
30341	17716 ChEBI	lactose	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
30341	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
30341	29864 ChEBI	mannitol	+	carbon source
30341	37684 ChEBI	mannose	+	carbon source
69447	37684 ChEBI	mannose	+/-	growth
30341	28053 ChEBI	melibiose	+	carbon source
30341	17268 ChEBI	myo-inositol	+	carbon source
30341	17632 ChEBI	nitrate	+	reduction
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
30341	16634 ChEBI	raffinose	+	carbon source
69447	16634 ChEBI	raffinose	-	growth
30341	26546 ChEBI	rhamnose	+	carbon source
69447	26546 ChEBI	rhamnose	-	growth
30341	33942 ChEBI	ribose	+	carbon source
30341	17814 ChEBI	salicin	+	carbon source
30341	17992 ChEBI	sucrose	+	carbon source
69447	17992 ChEBI	sucrose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
30341	27082 ChEBI	trehalose	+	carbon source
30341	18222 ChEBI	xylose	+	carbon source
69447	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
30341	catalase	+	1.11.1.6
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69447	-	+	+/-	+	-	+	-	+	+	+/-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69447	not determinedn.d.	+	+/-	+	+	+	+	+/-	+	+	+	+	+	+	-	+	+/-	+	+/-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19179	soil	Jiangxi	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ938354 (>99% sequence identity) for Lentzea guizhouensis from Microbeatlas

Aquatic Samples	8
Soil Samples	183
Animal Samples	13
Plant Samples	36
Total Samples	240

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19179	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2675903132 annotated assembly for Lentzea jiangxiensis CGMCC 4.6609	scaffold	GCA_900104175	641025.3	2675903132	641025	64.87

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19179	Lentzea jiangxiensis strain FXJ1.034 16S ribosomal RNA gene, partial sequence	FJ938354	1474		641025

GC content

19179

GC-content (mol%)69.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lentzea jiangxiensis CGMCC 4.6609
NCBI: GCA_900104175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	70.40	no
125439	motility	BacteriaNetⓘ	no	84.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lentzea jiangxiensis CGMCC 4.6609
NCBI: GCA_900104175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.83	no
125438	anaerobic	anaerobicⓘ	no	97.44	no
125438	aerobic	aerobicⓘ	yes	91.56	no
125438	spore-forming	spore-formingⓘ	yes	86.12	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Tryptophan-Centric Bioinformatics Identifies New Lasso Peptide Modifications.	Harris LA, Saad H, Shelton KE, Zhu L, Guo X, Mitchell DA.	Biochemistry	10.1021/acs.biochem.4c00035	2024
Genetics	Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.	Gonzalez-Salazar LA, Quezada M, Rodriguez-Orduna L, Ramos-Aboites H, Capon RJ, Souza-Saldivar V, Barona-Gomez F, Licona-Cassani C.	Microb Genom	10.1099/mgen.0.000921	2023
Phylogeny	Lentzea guizhouensis sp. nov., a novel lithophilous actinobacterium isolated from limestone from the Karst area, Guizhou, China.	Cao CL, Zhou XQ, Qin S, Tao FX, Jiang JH, Lian B	Antonie Van Leeuwenhoek	10.1007/s10482-015-0589-x	2015
Phylogeny	Lentzea jiangxiensis sp. nov., isolated from acidic soil.	Li X, Zhang L, Ding Y, Gao Y, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.033795-0	2011

References

#19179	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45855
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26682	IJSEM 2342 2012 ( DOI 10.1099/ijs.0.033795-0 , PubMed 22140164 )
#30341	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26682
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69447	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lentzea jiangxiensis (DSM 45855, CGMCC 4.6609, NBRC 106680)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900104175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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