Amycolatopsis jiangsuensis (DSM 45859, KCTC 19885, KLBMP 1262)

Name: Amycolatopsis jiangsuensis (DSM 45859, KCTC 19885, KLBMP 1262)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23214

Type strain

Culture col. no. DSM 45859 KCTC 19885 KLBMP 1262 NBRC 108679

NCBI tax ID(s) 1181879

Special Collections DSMZ KCTC

History DSMZ <- KCTC; KCTC 19885 KCTC <- S Qin, Xuzhou Normal Univ., China

Links

Amycolatopsis jiangsuensis DSM 45859 is an aerobe, Gram-positive bacterium that was isolated from surface-sterilized healthy stems of the coastal plant Dendranthema indicum Des Moul.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404138

KCTC 19885,NBRC 108679,DSM 45859

@ref 20215

Last LPSN update 2026-05-29 08:30:24

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Amycolatopsis

Species Amycolatopsis jiangsuensis

Full scientific name Amycolatopsis jiangsuensis Xing et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	positive
125439	positive	98.612
125439		92.962

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18782	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18782	positive	growth	28
67771	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	99.213

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
18782	surface-sterilized healthy stems of the coastal plant Dendranthema indicum (Linn.) Des Moul	Dendranthema indicum	Jiangsu Province, Nantong	China	CHN	Asia
67771	From plant		Jiangsu	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18782	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420486v1 assembly for Amycolatopsis jiangsuensis DSM 45859	contig	GCA_014204865	1181879.3	2870593509	1181879	76.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18782	Amycolatopsis jiangsuensis strain KLBMP 1262 16S ribosomal RNA gene, partial sequence	JQ819253	1444		1181879

GC content

@ref	GC-content (mol%)	Method
18782	70.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1420486v1 assembly for Amycolatopsis jiangsuensis DSM 45859
BV-BRC: 1181879.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.21	no
125439	gram_stain	BacteriaNetⓘ	positive	98.61	no
125439	motility	BacteriaNetⓘ	no	92.96	no
125439	spore_formation	BacteriaNetⓘ	yes	86.08	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Amycolatopsis jiangsuensis strain DSM 45859
PATRIC: 1181879.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.41	no
125438	anaerobic	anaerobicⓘ	no	98.84	yes
125438	spore-forming	spore-formingⓘ	yes	82.38	no
125438	aerobic	aerobicⓘ	yes	89.70	yes
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Cancer killers in the human gut microbiota: diverse phylogeny and broad spectra.	Zhou YJ, Zhao DD, Liu H, Chen HT, Li JJ, Mu XQ, Liu Z, Li X, Tang L, Zhao ZY, Wu JH, Cai YX, Huang YZ, Wang PG, Jia YY, Liang PQ, Peng X, Chen SY, Yue ZL, Yuan XY, Lu T, Yao BQ, Li YG, Liu GR, Liu SL.	Oncotarget	10.18632/oncotarget.17319	2017
Genetics	Bioprospecting of unexplored halophilic actinobacteria against human infectious pathogens.	Rathinam AJ, Santhaseelan H, Dahms HU, Dinakaran VT, Murugaiah SG.	3 Biotech	10.1007/s13205-023-03812-8	2023
Phylogeny	Amycolatopsis panacis sp. nov., isolated from Panax notoginseng rhizospheric soil.	Peng G, Xiong DS, Li LC, Hu JY, Bao S, Chen YW, Li YQ, Xu LH, Miao CP, Zhao LX	Int J Syst Evol Microbiol	10.1099/ijsem.0.003202	2019
Phylogeny	Amycolatopsis jiangsuensis sp. nov., a novel endophytic actinomycete isolated from a coastal plant in Jiangsu, China.	Xing K, Liu W, Zhang YJ, Bian GK, Zhang WD, Tamura T, Lee JS, Qin S, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9823-y	2012
Phylogeny	Amycolatopsis aidingensis sp. nov., a Halotolerant Actinobacterium, Produces New Secondary Metabolites.	Li R, Wang M, Ren Z, Ji Y, Yin M, Zhou H, Tang SK	Front Microbiol	10.3389/fmicb.2021.743116	2021
Phylogeny	Amycolatopsis suaedae sp. nov., an endophytic actinomycete isolated from Suaeda maritima roots.	Chantavorakit T, Suksaard P, Matsumoto A, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.003546	2019

References

#18782	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45859
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Amycolatopsis jiangsuensis (DSM 45859, KCTC 19885, KLBMP 1262)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014204865

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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