Name: Amycolatopsis jiangsuensis DSM 45859
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23214

Type strain:

Species: Amycolatopsis jiangsuensis

Culture col. no.: DSM 45859, KCTC 19885, KLBMP 1262, NBRC 108679

Strain history: <- S Qin, Xuzhou Normal Univ., China

NCBI tax ID(s): 1181879 (species)

SI-ID 404138

DSM 45859

Section

Amycolatopsis jiangsuensis DSM 45859 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface-sterilized healthy stems of the coastal plant Dendranthema indicum Des Moul.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis jiangsuensis**
	Full Scientific Name (LPSN)	Amycolatopsis jiangsuensis Xing et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %97.134

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18782]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18782]

Culture medium growth

[Ref.: #18782]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18782]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18782]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #18782]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18782]	Sample type/isolated from	surface-sterilized healthy stems of the coastal plant Dendranthema indicum (Linn.) Des Moul
[Ref.: #18782]	Host species	Dendranthema indicum
[Ref.: #18782]	Geographic location (country and/or sea, region)	Jiangsu Province, Nantong
[Ref.: #18782]	Country	China
[Ref.: #18782]	Country ISO 3 Code	CHN
[Ref.: #18782]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jiangsu
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18782]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	TSA: Manduca sexta contig02858.MaseCH mRNA sequence	JO819253	956	ENA	7130 tax ID
[Ref.: #18782]	Amycolatopsis jiangsuensis strain KLBMP 1262 16S ribosomal RNA gene, partial sequence	JQ819253	1444	ENA	1181879 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Amycolatopsis jiangsuensis DSM 45859	GCA_014204865	contig	GenBank	1181879 tax ID	*
[Ref.: #66792]	Amycolatopsis jiangsuensis strain DSM 45859	1181879.3	wgs	PATRIC	1181879 tax ID	*
[Ref.: #66792]	Amycolatopsis jiangsuensis DSM 45859	2870593509	draft	JGI IMG/M	1181879 tax ID	*

[Ref.: #18782]

GC-content

70.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Amycolatopsis jiangsuensis strain DSM 45859 PATRIC: 1181879.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Amycolatopsis jiangsuensis strain DSM 45859 PATRIC: 1181879.3
[Ref.: #69480]	motile	no	92.918	no
[Ref.: #69480]	gram-positive	yes	93.114	yes
[Ref.: #69480]	anaerobic	no	99.245	yes
[Ref.: #69480]	aerobic	yes	92.979	yes
[Ref.: #69480]	halophile	no	86.094	no
[Ref.: #69480]	spore-forming	yes	91.312	no
[Ref.: #69480]	flagellated	no	97.836	no
[Ref.: #69480]	thermophile	no	97.911	no
[Ref.: #69480]	glucose-util	yes	87.72	no
[Ref.: #69480]	glucose-ferment	no	91.211	no

Availability in culture collections External links

[Ref.: #18782]

Culture collection no.

DSM 45859, KCTC 19885, KLBMP 1262, NBRC 108679

[Ref.: #87442]

SI-ID 404138

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis panacis sp. nov., isolated from Panax notoginseng rhizospheric soil.	Peng G, Xiong DS, Li LC, Hu JY, Bao S, Chen YW, Li YQ, Xu LH, Miao CP, Zhao LX	Int J Syst Evol Microbiol	10.1099/ijsem.0.003202	2019	*
Phylogeny	Amycolatopsis jiangsuensis sp. nov., a novel endophytic actinomycete isolated from a coastal plant in Jiangsu, China.	Xing K, Liu W, Zhang YJ, Bian GK, Zhang WD, Tamura T, Lee JS, Qin S, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9823-y	2012	*
Phylogeny	Amycolatopsis aidingensis sp. nov., a Halotolerant Actinobacterium, Produces New Secondary Metabolites.	Li R, Wang M, Ren Z, Ji Y, Yin M, Zhou H, Tang SK	Front Microbiol	10.3389/fmicb.2021.743116	2021	*
Phylogeny	Amycolatopsis suaedae sp. nov., an endophytic actinomycete isolated from Suaeda maritima roots.	Chantavorakit T, Suksaard P, Matsumoto A, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.003546	2019	*

References

#18782

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45859

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87442

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404138.1 )

* These data were automatically processed and therefore are not curated

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Amycolatopsis jiangsuensis strain DSM 45859

Amycolatopsis jiangsuensis strain DSM 45859

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