Name: Brevundimonas naejangsanensis BIO-TAS2-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2320

Type strain:

Species: Brevundimonas naejangsanensis

Strain Designation: BIO-TAS2-2

Culture col. no.: DSM 23858, CCUG 57609, KCTC 22631

Strain history: <- CCUG <- J. H. Yoon, KRIBB

NCBI tax ID(s): 1121125 (strain), 588932 (species)

SI-ID 401892

DSM 23858, CCUG 57609

Other strains from Brevundimonas naejangsanensis

B. naejangsanensis DSM 30130, ATCC 4335, IFO 13181, ...
B. naejangsanensis 6, DSM 1194

Section

Brevundimonas naejangsanensis BIO-TAS2-2 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Brevundimonas*
	Species	**Brevundimonas naejangsanensis**
	Full Scientific Name (LPSN)	Brevundimonas naejangsanensis Kang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29368]	Gram stain	negative

[Ref.: #29368]	Cell length	2.35 µm

[Ref.: #29368]	Cell width	0.4 µm

[Ref.: #29368]	Cell shape	rod-shaped

[Ref.: #29368]	Motility	yes

[Ref.: #29368]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17408]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #17408]

Culture medium growth

[Ref.: #17408]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17408]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17408]	growth	28 °C
[Ref.: #29368]	growth	04-50 °C
[Ref.: #29368]	optimum	30 °C

[Ref.: #17408]	Temperature range	mesophilic
[Ref.: #29368]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29368]			optimum	8
[Ref.: #29368]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29368]

Oxygen tolerance

anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29368]		NaCl		growth	0-4	%
[Ref.: #29368]		NaCl		optimum	0.5	%

[Ref.: #29368]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29368]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #29368]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #29368]	acetate ChEBI	+	carbon source
[Ref.: #29368]	alanine ChEBI	+	carbon source
[Ref.: #29368]	asparagine ChEBI	+	carbon source
[Ref.: #29368]	aspartate ChEBI	+	carbon source
[Ref.: #29368]	histidine ChEBI	+	carbon source
[Ref.: #29368]	L-alaninamide ChEBI	+	carbon source
[Ref.: #29368]	tween 20 ChEBI	+	carbon source
[Ref.: #29368]	tween 40 ChEBI	+	carbon source
[Ref.: #29368]	tween 60 ChEBI	+	carbon source
[Ref.: #29368]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29368]	acid phosphatase	+	3.1.3.2
[Ref.: #29368]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29368]	catalase	+	1.11.1.6
[Ref.: #29368]	cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #61388]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	65.9	17.824
C16:0	22.5	16
C16:1 ω7c	6.1	15.819
C12:0 3OH	2.4	13.455
Unidentified	1.3	18.145
C14:0	0.9	14
C19:0 CYCLO ω8c	0.9	18.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17408]	Sample type/isolated from	soil
[Ref.: #17408]	Geographic location (country and/or sea, region)	Naejang Mountain
[Ref.: #17408]	Country	Republic of Korea
[Ref.: #17408]	Country ISO 3 Code	KOR
[Ref.: #17408]	Continent	Asia

[Ref.: #61388]	Sample type/isolated from	Soil
[Ref.: #61388]	Sampling date	2007-01-01
[Ref.: #61388]	Geographic location (country and/or sea, region)	Jeongeup
[Ref.: #61388]	Country	Republic of Korea
[Ref.: #61388]	Country ISO 3 Code	KOR
[Ref.: #61388]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ544245 (>99% sequence identity) for Brevundimonas from Microbeatlas

Aquatic Samples	6282
Soil Samples	5309
Animal Samples	11833
Plant Samples	2785
Total Samples	26209

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17408]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17408]	Brevundimonas naejangsanensis strain BIO-TAS2-2 16S ribosomal RNA gene, partial sequence	FJ544245	1418	ENA	588932 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevundimonas naejangsanensis DSM 23858	GCA_000421705	contig	GenBank	1121125 tax ID	*
[Ref.: #66792]	Brevundimonas naejangsanensis DSM 23858	1121125.3	wgs	PATRIC	1121125 tax ID	*
[Ref.: #66792]	Brevundimonas naejangsanensis DSM 23858	2524614659	draft	JGI IMG/M	1121125 tax ID	*

[Ref.: #17408]	GC-content	67.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29368]	GC-content	67 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevundimonas naejangsanensis DSM 23858 PATRIC: 1121125.3
[Ref.: #69480]	motile	yes	89.938	yes
[Ref.: #69480]	flagellated	no	80.974	no
[Ref.: #69480]	gram-positive	no	98.392	yes
[Ref.: #69480]	anaerobic	no	93.408	yes
[Ref.: #69480]	aerobic	yes	79.705	yes
[Ref.: #69480]	halophile	no	90.027	yes
[Ref.: #69480]	spore-forming	no	94.216	no
[Ref.: #69480]	thermophile	no	98.57	no
[Ref.: #69480]	glucose-util	yes	56.63	no
[Ref.: #69480]	glucose-ferment	no	91.597	no

Availability in culture collections External links

[Ref.: #17408]

Culture collection no.

DSM 23858, CCUG 57609, KCTC 22631

[Ref.: #71877]

SI-ID 401892

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Aquidulcibacter paucihalophilus gen. nov., sp. nov., a novel member of family Caulobacteraceae isolated from cyanobacterial aggregates in a eutrophic lake.	Cai H, Shi Y, Wang Y, Cui H, Jiang H	Antonie Van Leeuwenhoek	10.1007/s10482-017-0889-4	2017	*
Phylogeny	Brevundimonas balnearis sp. nov., isolated from the well water of a thermal bath.	Toth E, Szuroczki S, Keki Z, Kosztik J, Makk J, Boka K, Sproer C, Marialigeti K, Schumann P	Int J Syst Evol Microbiol	10.1099/ijsem.0.001746	2017	*
Phylogeny	Brevundimonas naejangsanensis sp. nov., a proteolytic bacterium isolated from soil, and reclassification of Mycoplana bullata into the genus Brevundimonas as Brevundimonas bullata comb. nov.	Kang SJ, Choi NS, Choi JH, Lee JS, Yoon JH, Song JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.011700-0	2009	*
	Biosynthesis of Poly-ss-Hydroxybutyrate (PHB) from Different Bacterial Strains Grown on Alternative Cheap Carbon Sources.	El-Kadi SM, Elbagory M, El-Zawawy HAH, El-Shaer HFA, Shoukry AA, El-Nahrawy S, Omara AE, Ali DFI	Polymers (Basel)	10.3390/polym13213801	2021	*

References

#17408

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23858

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29368

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25777 (see below)

#61388 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57609

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71877

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401892.1 )

#25777

IJSEM 3155 2009 ( DOI 10.1099/ijs.0.011700-0 , PubMed 19643873 )

* These data were automatically processed and therefore are not curated

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Brevundimonas naejangsanensis DSM 23858

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