Name: Paenibacillus larvae 04-309
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23177

Type strain:

Species: Paenibacillus larvae

Strain Designation: 04-309

Culture col. no.: DSM 25430

Strain history: <- E. Genersch, Inst. for Bee Research, Hohen Neuendorf, Germany; 04-309 <- K. Hedtke and E. Genersch

NCBI tax ID(s): 1464 (species)

SI-ID 400582

DSM 25430

Other strains from Paenibacillus larvae

Section

Paenibacillus larvae 04-309 is a microaerophile, spore-forming, mesophilic animal pathogen that was isolated from brood comb honey.

motile
spore-forming
animal pathogen
mesophilic
microaerophile
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus larvae**
	Full Scientific Name (LPSN)	Paenibacillus larvae (White 1906) Ash et al. 1994

	Synonym	Bacillus larvae
	Synonym	Paenibacillus pulvifaciens
	Synonym	Bacillus pulvifaciens
	Synonym	Paenibacillus larvae subsp. pulvifaciens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %90.262

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18879]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #18879]

Culture medium growth

[Ref.: #18879]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18879]

Culture medium composition

expand / minimize

[Ref.: #18879]

Culture medium

J - AGAR (DSMZ Medium 262)

[Ref.: #18879]

Culture medium growth

[Ref.: #18879]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18879]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18879]			growth	35 °C

[Ref.: #18879]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #18879]

Oxygen tolerance

microaerophile

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18879]	Sample type/isolated from	brood comb honey
[Ref.: #18879]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #18879]	Country	Germany
[Ref.: #18879]	Country ISO 3 Code	DEU
[Ref.: #18879]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product

#Other

#Animal produced food (natural)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18879]	Pathogenicity (animal)	yes
[Ref.: #18879]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus larvae subsp. larvae DSM 25430	GCA_000511405	complete	GenBank	697284 tax ID	*
[Ref.: #66792]	Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II	GCA_002951895	complete	GenBank	697284 tax ID	*
[Ref.: #66792]	Paenibacillus larvae subsp. larvae DSM 25430	697284.8	plasmid	PATRIC	697284 tax ID	*
[Ref.: #66792]	Paenibacillus larvae subsp. larvae DSM 25430	697284.3	complete	PATRIC	697284 tax ID	*
[Ref.: #66792]	Paenibacillus larvae subsp. larvae DSM 25430 strain DSM 25430; ERIC_II	697284.9	complete	PATRIC	697284 tax ID	*
[Ref.: #66792]	Paenibacillus larvae larvae DSM 25430	2850744690	complete	JGI IMG/M	697284 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus larvae subsp. larvae DSM 25430 NCBI: GCA_002951895.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430 NCBI: GCA_000511405.1
[Ref.: #69480]	motile	yes	81.816	no
[Ref.: #69480]	flagellated	yes	61.503	no
[Ref.: #69480]	gram-positive	yes	81.917	no
[Ref.: #69480]	anaerobic	no	97.738	yes
[Ref.: #69480]	halophile	no	93.65	no
[Ref.: #69480]	spore-forming	yes	97.079	no
[Ref.: #69480]	thermophile	no	79.979	no
[Ref.: #69480]	glucose-util	yes	88.161	no
[Ref.: #69480]	aerobic	yes	90.24	no
[Ref.: #69480]	glucose-ferment	no	89.007	no

Availability in culture collections External links

[Ref.: #18879]

Culture collection no.

DSM 25430

[Ref.: #87410]

SI-ID 400582

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	How to kill the honey bee larva: genomic potential and virulence mechanisms of Paenibacillus larvae.	Djukic M, Brzuszkiewicz E, Funfhaus A, Voss J, Gollnow K, Poppinga L, Liesegang H, Garcia-Gonzalez E, Genersch E, Daniel R	PLoS One	10.1371/journal.pone.0090914	2014	*

References

#18879

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25430

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87410

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400582.1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus larvae subsp. larvae DSM 25430

Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430

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