Name: Brevibacillus massiliensis phR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23173

Type strain:

Species: Brevibacillus massiliensis

Strain Designation: phR

Culture col. no.: DSM 25447, CSUR P177

Strain history: <- P. Hugon, Timone Hospital, Marseille, France; phR <- P. Hugon, URMITE, CNRS 6236, Marseille, France

NCBI tax ID(s): 1118054 (species)

SI-ID 398258

DSM 25447

Section

Brevibacillus massiliensis phR is a spore-forming, mesophilic, motile bacterium that was isolated from fecal flora of a woman suffering from morbid obesity.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Brevibacillus*
	Species	**Brevibacillus massiliensis**
	Full Scientific Name (LPSN)	Brevibacillus massiliensis Hugon et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %91.569

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19355]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #19355]

Culture medium growth

[Ref.: #19355]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19355]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19355]			growth	30 °C

[Ref.: #19355]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19355]	Sample type/isolated from	fecal flora of a woman suffering from morbid obesity
[Ref.: #19355]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #19355]	Country	France
[Ref.: #19355]	Country ISO 3 Code	FRA
[Ref.: #19355]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Female

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19355]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19355]	Brevibacillus massiliensis strain phR 16S ribosomal RNA gene, partial sequence	JN837488	1477	ENA	1118054 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevibacillus massiliensis phR	GCA_000311785	scaffold	GenBank	1118054 tax ID	*
[Ref.: #66792]	Brevibacillus massiliensis phR	2547132151	draft	JGI IMG/M	1118054 tax ID	*

[Ref.: #19355]

GC-content

53.1 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brevibacillus massiliensis phR NCBI: GCA_000311785.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevibacillus massiliensis phR NCBI: GCA_000311785.1
[Ref.: #69480]	motile	yes	86.79	no
[Ref.: #69480]	flagellated	no	50	no
[Ref.: #69480]	gram-positive	yes	77.471	no
[Ref.: #69480]	anaerobic	no	96.161	no
[Ref.: #69480]	aerobic	yes	68.779	no
[Ref.: #69480]	halophile	no	92.512	no
[Ref.: #69480]	spore-forming	yes	95.989	no
[Ref.: #69480]	glucose-util	yes	83.331	no
[Ref.: #69480]	thermophile	no	89.433	yes
[Ref.: #69480]	glucose-ferment	no	92.686	no

Availability in culture collections External links

[Ref.: #19355]

Culture collection no.

DSM 25447, CSUR P177

[Ref.: #87406]

SI-ID 398258

References

#19355

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25447

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87406

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398258.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Brevibacillus massiliensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF