Name: Duganella zoogloeoides OSU 115
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23169

Type strain:

Species: Duganella zoogloeoides

Strain Designation: OSU 115, 115

Culture col. no.: DSM 16928, ATCC 25935, IAM 12670, CCUG 55606, JCM 20729, NCIMB 11941, KCTC 2582, NBRC 102465

Strain history: IAM 12670 <-- ATCC 25935 <-- P. R. Dugan OSU 115 (Zoogloea ramigera).

NCBI tax ID(s): 1261617 (strain), 75659 (species)

SI-ID 38724

ATCC 25935, NCIMB 11941, IAM12670, KCTC 2582, JCM 20729, NBRC 102465, CCUG 55606

Special Collections

Section

Duganella zoogloeoides OSU 115 is an aerobe, Gram-negative bacterium that was isolated from Trickling filter.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Duganella*
	Species	**Duganella zoogloeoides**
	Full Scientific Name (LPSN)	Duganella zoogloeoides Hiraishi et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.5

[Ref.: #60667]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18814]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #18814]

Culture medium growth

[Ref.: #18814]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18814]

Culture medium composition

expand / minimize

[Ref.: #18814]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #18814]

Culture medium growth

[Ref.: #18814]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #18814]	growth	30 °C
[Ref.: #60667]	growth	30 °C
[Ref.: #67770]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60667]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18814]	Sample type/isolated from	Trickling filter
[Ref.: #18814]	Country	USA
[Ref.: #18814]	Country ISO 3 Code	USA
[Ref.: #18814]	Continent	North America

[Ref.: #60667]	Sample type/isolated from	Trickling filter
[Ref.: #60667]	Sampling date	1964-01-01

[Ref.: #67770]	Sample type/isolated from	Zoogloeal mass on limestone
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Engineered product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D14256 (>99% sequence identity) for Duganella from Microbeatlas

Aquatic Samples	3834
Soil Samples	5243
Animal Samples	4287
Plant Samples	4842
Total Samples	18206

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18814]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18814]	Duganella zoogloeoides gene for 16S rRNA	D14256	1451	GenBank ENA	75659 tax ID
[Ref.: #124043]	Duganella zoogloeoides gene for 16S rRNA, partial sequence, strain: NBRC 102465.	AB681807	1456	GenBank ENA	75659 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Duganella zoogloeoides ATCC 25935	GCA_000383895	scaffold	GenBank ENA	1261617 tax ID
[Ref.: #66792]	Duganella zoogloeoides ATCC 25935	1261617.3	wgs	PATRIC	1261617 tax ID	*
[Ref.: #66792]	Duganella zoogloeoides ATCC 25935	2518645587	draft	JGI IMG/M	1261617 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Duganella zoogloeoides ATCC 25935 ATCC 25935 NCBI: GCA_000383895.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Duganella zoogloeoides ATCC 25935 PATRIC: 1261617.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.481	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.982	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.483	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.997	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.697	no

Availability in culture collections External links

[Ref.: #18814]

Culture collection no.

DSM 16928, ATCC 25935, IAM 12670, CCUG 55606, JCM 20729, NCIMB 11941, KCTC 2582, NBRC 102465

[Ref.: #87402]

SI-ID 38724

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Duganella phyllosphaerae sp. nov., isolated from the leaf surface of Trifolium repens and proposal to reclassify Duganella violaceinigra into a novel genus as Pseudoduganella violceinigra gen. nov., comb. nov.	Kampfer P, Wellner S, Lohse K, Martin K, Lodders N	Syst Appl Microbiol	10.1016/j.syapm.2011.10.003	2011	*
Phylogeny	Massilia glaciei sp. nov., isolated from the Muztagh Glacier.	Gu Z, Liu Y, Xu B, Wang N, Jiao N, Shen L, Liu H, Zhou Y, Liu X, Li J, Sun J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002252	2017	*
Phylogeny	Duganella ginsengisoli sp. nov., isolated from ginseng soil.	Zhang J, Kim YJ, Hoang VA, Lan Nguyen N, Wang C, Kang JP, Wang D, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000669	2015	*
Phylogeny	Proposal to reclassify Zoogloea ramigera IAM 12670 (P. R. Dugan 115) as Duganella zoogloeoides gen. nov., sp. nov.	Hiraishi A, Shin YK, Sugiyama J	Int J Syst Bacteriol	10.1099/00207713-47-4-1249	1997	*

References

#18814

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16928

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#60667 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55606

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87402

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38724.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Duganella zoogloeoides ATCC 25935 ATCC 25935

Duganella zoogloeoides ATCC 25935

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