Name: Nocardioides panaciterrulae DSM 21350
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23166

Type strain:

Species: Nocardioides panaciterrulae

Culture col. no.: DSM 21350, KACC 14271, KCTC 19471, Gsoil 958

Strain history: <- S. T. Lee, KAIST <- W.-T. Im, KAIST; Gsoil 958

NCBI tax ID(s): 661492 (species)

SI-ID 405027

DSM 21350

Section

Nocardioides panaciterrulae DSM 21350 is a mesophilic, Gram-positive bacterium that was isolated from soil, ginseng field.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides panaciterrulae**
	Full Scientific Name (LPSN)	Nocardioides panaciterrulae Kim et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19325]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19325]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #19325]

Culture medium growth

[Ref.: #19325]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19325]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19325]			growth	28 °C

[Ref.: #19325]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.899

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19325]	Sample type/isolated from	soil, ginseng field
[Ref.: #19325]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #19325]	Country	Republic of Korea
[Ref.: #19325]	Country ISO 3 Code	KOR
[Ref.: #19325]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19325]	Nocardioides panaciterrulae strain Gsoil 958 16S ribosomal RNA gene, partial sequence	GQ339903	1465	ENA	661492 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nocardioides panaciterrulae DSM 21350	GCA_013409645	contig	GenBank	661492 tax ID	*
[Ref.: #66792]	Nocardioides panaciterrulae strain DSM 21350	661492.3	wgs	PATRIC	661492 tax ID	*
[Ref.: #66792]	Nocardioides panaciterrulae DSM 21350	2844830896	draft	JGI IMG/M	661492 tax ID	*

[Ref.: #19325]

GC-content

70.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardioides panaciterrulae strain DSM 21350 PATRIC: 661492.3
[Ref.: #69481]	spore-forming	yes	77	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardioides panaciterrulae strain DSM 21350 PATRIC: 661492.3
[Ref.: #69480]	gram-positive	yes	93.138	no
[Ref.: #69480]	anaerobic	no	98.691	no
[Ref.: #69480]	halophile	no	88.898	no
[Ref.: #69480]	spore-forming	no	84.828	no
[Ref.: #69480]	glucose-util	yes	88.971	no
[Ref.: #69480]	thermophile	no	97.329	yes
[Ref.: #69480]	flagellated	no	98.756	no
[Ref.: #69480]	motile	no	94.746	no
[Ref.: #69480]	aerobic	yes	89.234	no
[Ref.: #69480]	glucose-ferment	no	90.185	no

Availability in culture collections External links

[Ref.: #19325]

Culture collection no.

DSM 21350, KACC 14271, KCTC 19471, Gsoil 958

[Ref.: #87400]

SI-ID 405027

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides panaciterrulae sp. nov., isolated from soil of a ginseng field, with ginsenoside converting activity.	Kim JK, Liu QM, Park HY, Kang MS, Kim SC, Im WT, Yoon MH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9919-z	2013	*
Phylogeny	Nocardioides ungokensis sp. nov., isolated from lake sediment.	Zhao Y, Liu Q, Kang MS, Jin F, Yu H, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.000657	2015	*

References

#19325

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21350

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87400

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405027.1 )

* These data were automatically processed and therefore are not curated

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Nocardioides panaciterrulae strain DSM 21350

Nocardioides panaciterrulae strain DSM 21350

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