Nocardioides albertanoniae (DSM 25218, CECT 8014, CD40127)

Name: Nocardioides albertanoniae (DSM 25218, CECT 8014, CD40127)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23165

Type strain

Strain Designation CD40127

Culture col. no. DSM 25218 CECT 8014 CD40127

NCBI tax ID(s) 1175486

Special Collections DSMZ Literature strains

History <- V. Jurado, Inst. de Recursos Naturales y Agrobiologia, CSIC, Sevilla, Spain; CD40127 <- L. Trobajo

Links

Nocardioides albertanoniae CD40127 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from green biofilm from the wall of a catacombe.

Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 387810

CECT 8014,DSM 25218

@ref 20215

Last LPSN update 2026-02-09 11:23:41

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides albertanoniae

Full scientific name Nocardioides albertanoniae Alias-Villegas et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30766	positive	1.3 µm	0.7 µm	rod-shaped
125438					91.5
125439	positive				99.7

Pigmentation

30766

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19302	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
19302	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19302	positive	growth	28	mesophilic
30766	positive	growth	10-30
30766	positive	optimum	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30766	aerobe
125438	aerobe	91.168
125439	obligate aerobe	98.5

Spore formation

30766

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30766	NaCl	positive	growth	0-10 %
30766	NaCl	positive	optimum	2 %

Observation

30766

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30766	22599 ChEBI	arabinose	+	carbon source
30766	24265 ChEBI	gluconate	+	carbon source
30766	17234 ChEBI	glucose	+	carbon source
30766	25115 ChEBI	malate	+	carbon source
30766	17306 ChEBI	maltose	+	carbon source
30766	29864 ChEBI	mannitol	+	carbon source
30766	37684 ChEBI	mannose	+	carbon source
30766	506227 ChEBI	N-acetylglucosamine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30766	acid phosphatase	+	3.1.3.2
30766	alkaline phosphatase	+	3.1.3.1
30766	catalase	+	1.11.1.6
30766	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Built environment
#Environmental	#Biofilm

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19302	green biofilm from the wall of a catacombe	Rome, Domitilla Catacombs	Italy	ITA	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19302	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM671631v1 assembly for Nocardioides albertanoniae DSM 25218	contig	GCA_006716315	1175486.3	2816332112	1175486	77.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19302	Nocardioides albertanoniae partial 16S rRNA gene, type strain CD40127T	HE801966	1407		1175486

GC content

@ref	GC-content (mol%)	Method
19302	69.7	high performance liquid chromatography (HPLC)
30766	69.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardioides albertanoniae DSM 25218
NCBI: GCA_006716315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	54.50	no
125439	motility	BacteriaNetⓘ	no	78.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardioides albertanoniae strain DSM 25218
PATRIC: 1175486.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.85	yes
125438	anaerobic	anaerobicⓘ	no	97.39	yes
125438	spore-forming	spore-formingⓘ	yes	53.08	no
125438	aerobic	aerobicⓘ	yes	91.17	yes
125438	thermophilic	thermophileⓘ	no	95.49	no
125438	flagellated	motile2+ⓘ	no	91.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Psi-Footprinting approach for the identification of protein synthesis inhibitor producers.	Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Brotz-Oesterhelt H, Mast Y	NAR Genom Bioinform	10.1093/nargab/lqac055	2022
Genetics	Polyphasic characterization and genomic insights into Nocardioides turkmenicus sp. nov. isolated from a desert soil.	Saygin H, Guven K, Cetin D, Sahin N.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01920-2	2024
Phylogeny	Nocardioides albertanoniae sp. nov., isolated from Roman catacombs.	Alias-Villegas C, Jurado V, Laiz L, Miller AZ, Saiz-Jimenez C	Int J Syst Evol Microbiol	10.1099/ijs.0.043885-0	2012

References

#19302	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25218
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27097	IJSEM 1280 2013 ( DOI 10.1099/ijs.0.043885-0 , PubMed 22798645 )
#30766	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27097
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides albertanoniae (DSM 25218, CECT 8014, CD40127)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_006716315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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