Name: Actinoplanes rishiriensis RI50-RCA114
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23113

Type strain:

Species: Actinoplanes rishiriensis

Strain Designation: RI50-RCA114

Culture col. no.: DSM 45866, BCC 49184, NBRC 108556

Strain history: <- C Suriyachadkun, BCC; BCC 49184 <- Y. Sakuraki

NCBI tax ID(s): 1050105 (species)

SI-ID 397359

DSM 45866

Section

Actinoplanes rishiriensis RI50-RCA114 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes rishiriensis**
	Full Scientific Name (LPSN)	Actinoplanes rishiriensis Yamamura et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

[Ref.: #19173]

Caption:

Medium 553 28°C

[Ref.: #19173]

Intellectual property rights:

[Ref.: #19173]

Caption:

Medium 65 28°C

[Ref.: #19173]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19173]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19173]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #19173]

Culture medium composition

expand / minimize

[Ref.: #19173]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #19173]

Culture medium growth

[Ref.: #19173]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19173]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19173]			growth	28 °C

[Ref.: #19173]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %95
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19173]	Sample type/isolated from	soil
[Ref.: #19173]	Geographic location (country and/or sea, region)	Rishiri Island, Hokkaido
[Ref.: #19173]	Country	Japan
[Ref.: #19173]	Country ISO 3 Code	JPN
[Ref.: #19173]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB641831 (>99% sequence identity) for Actinoplanes rishiriensis from Microbeatlas

Aquatic Samples	2
Soil Samples	47
Animal Samples	5
Plant Samples	3
Total Samples	57

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19173]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19173]	Actinoplanes rishiriensis gene for 16S rRNA, partial sequence	AB641831	1477	ENA	1050105 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoplanes rishiriensis NBRC 108556	GCA_016862375	contig	GenBank	1050105 tax ID	*
[Ref.: #66792]	Actinoplanes rishiriensis strain NBRC 108556	1050105.3	wgs	PATRIC	1050105 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes rishiriensis strain NBRC 108556 PATRIC: 1050105.3
[Ref.: #69481]	spore-forming	yes	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes rishiriensis strain NBRC 108556 PATRIC: 1050105.3
[Ref.: #69480]	motile	yes	66.073	no
[Ref.: #69480]	flagellated	no	88.964	no
[Ref.: #69480]	gram-positive	yes	87.785	no
[Ref.: #69480]	anaerobic	no	98.354	no
[Ref.: #69480]	aerobic	yes	91.969	no
[Ref.: #69480]	halophile	no	96.058	no
[Ref.: #69480]	spore-forming	yes	89.14	no
[Ref.: #69480]	thermophile	no	99.227	yes
[Ref.: #69480]	glucose-util	yes	89.453	no
[Ref.: #69480]	glucose-ferment	no	89.068	no

Availability in culture collections External links

[Ref.: #19173]

Culture collection no.

DSM 45866, BCC 49184, NBRC 108556

[Ref.: #87350]

SI-ID 397359

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Actinoplanes deserti sp. nov., isolated from a desert soil sample.	Habib N, Khan IU, Chu X, Xiao M, Li S, Fang BZ, Zhi XY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-1121-x	2018	*
Phylogeny	Actinoplanes rhizophilus sp. nov., an actinomycete isolated from the rhizosphere of Sansevieria trifasciata Prain.	He H, Xing J, Liu C, Li C, Ma Z, Li J, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000646	2015	*
Phylogeny	Actinoplanes rishiriensis sp. nov., a novel motile actinomycete isolated by rehydration and centrifugation method.	Yamamura H, Shimizu A, Nakagawa Y, Hamada M, Otoguro M, Tamura T, Hayakawa M	J Antibiot (Tokyo)	10.1038/ja.2012.8	2012	*

References

#19173

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45866

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87350

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397359.1 )

* These data were automatically processed and therefore are not curated

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Actinoplanes rishiriensis strain NBRC 108556

Actinoplanes rishiriensis strain NBRC 108556

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