Brevundimonas nasdae (DSM 14572, GTC 1043, JCM 11415)

Name: Brevundimonas nasdae (DSM 14572, GTC 1043, JCM 11415)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2310

Type strain

Strain Designation W1-2B

Culture col. no. DSM 14572 GTC 1043 JCM 11415 W1-2B KCTC 12493 2 more

NCBI tax ID(s) 172043

Special Collections DSMZ JCM KCTC CIP Literature strains

History <- T. Ezaki; W1-2B T. Ezaki W1-2B. CIP <- 2004, JCM <- 2001, T. Ezaki: strain W1-2B

Links

Brevundimonas nasdae W1-2B is an aerobe, Gram-negative, motile bacterium that was isolated from condensation water.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131535

JCM 11415,DSM 14572,CIP 108442,KCTC 12493,VTT E-072696

@ref 20215

Last LPSN update 2026-02-09 11:18:16

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Caulobacterales

Family Caulobacteraceae

Genus Brevundimonas

Species Brevundimonas nasdae

Full scientific name Brevundimonas nasdae Li et al. 2004

BacDive ID	Other strains from **Brevundimonas nasdae** (1)	Type strain
132722	B. nasdae DSM 100487, TPW 30

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30014	negative	2.75 µm	0.5 µm	rod-shaped
121235	negative			rod-shaped
125438	negative				96.328
125439	negative				94.6

Pigmentation

30014

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5390	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
5390	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40003	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121235	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5390	positive	growth	30
30014	positive	optimum	30
40003	positive	growth	30
67770	positive	growth	30
121235	positive	growth	10-37
121235	negative	growth	5
121235	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30014	aerobe
121235	obligate aerobe
125439	aerobe	91.3

Spore formation

@ref	Spore formation	Confidence
125439		95.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30014	NaCl	positive	growth	<4 %
121235	NaCl	positive	growth	0-4 %
121235	NaCl		growth	6 %
121235	NaCl		growth	8 %
121235	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30014	30089 ChEBI	acetate	+	carbon source
30014	16449 ChEBI	alanine	+	carbon source
30014	35391 ChEBI	aspartate	+	carbon source
30014	27689 ChEBI	decanoate	+	carbon source
30014	4853 ChEBI	esculin	+	hydrolysis
121235	4853 ChEBI	esculin	+	hydrolysis
30014	28260 ChEBI	galactose	+	carbon source
30014	17234 ChEBI	glucose	+	carbon source
30014	29987 ChEBI	glutamate	+	carbon source
30014	25115 ChEBI	malate	+	carbon source
30014	17306 ChEBI	maltose	+	carbon source
30014	51850 ChEBI	methyl pyruvate	+	carbon source
30014	506227 ChEBI	N-acetylglucosamine	+	carbon source
121235	17632 ChEBI	nitrate	-	reduction
121235	17632 ChEBI	nitrate	-	respiration
121235	16301 ChEBI	nitrite	-	reduction
30014	26271 ChEBI	proline	+	carbon source
30014	15361 ChEBI	pyruvate	+	carbon source
30014	30031 ChEBI	succinate	+	carbon source
30014	17992 ChEBI	sucrose	+	carbon source

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121235	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121235	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121235	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121235	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
121235	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121235	caseinase	+	3.4.21.50
30014	catalase	+	1.11.1.6
121235	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
30014	cytochrome oxidase	+	1.9.3.1
121235	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121235	gelatinase	+/-
121235	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121235	lipase	-
68382	lipase (C 14)	-		from API zym
121235	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121235	ornithine decarboxylase	-	4.1.1.17
121235	oxidase	-
121235	protease	+
68382	trypsin	+	3.4.21.4	from API zym
121235	tryptophan deaminase	-
121235	tween esterase	-
121235	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121235	-	+	+	+	-	+	+	-	+	+	+	+	+	-	-	+	+	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121235	not determinedn.d.	-	-	+	-	-	-	+	-	-	+	+	-	-	-	-	+	-	+	+	-	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5390	condensation water	Russian Station Mir	Russia	RUS	Europe
67770	Condensation water sample from the Russian space station Mir
121235	Environment, Condensation water sample from the Russian space station Mir		Russian Federation	RUS	Europe

Taxonmaps

69479

Global distribution of 16S sequence AB071954 (>99% sequence identity) for Brevundimonas from Microbeatlas

Aquatic Samples	4334
Soil Samples	1940
Animal Samples	9723
Plant Samples	5191
Total Samples	21188

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5390	1	Risk group (German classification) According to TRBA 466
121235	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3081477v1 assembly for Brevundimonas nasdae DSM 14572	contig	GCA_030814775	172043.8	2928222302	172043	72.83
66792	ASM1665400v1 assembly for Brevundimonas nasdae JCM 11415	contig	GCA_016654005	172043.4	8116540440	172043	70.07
124043	ASM3952285v1 assembly for Brevundimonas nasdae JCM 11415	contig	GCA_039522855			172043	69.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30014	Brevundimonas nasdae gene for 16S rRNA, partial sequence	AB071954	1427		172043
124043	Brevundimonas nasdae strain GTC 1043 16S ribosomal RNA gene, partial sequence.	MW228832	1320		172043

GC content

@ref	GC-content (mol%)	Method
30014	66.5
67770	66.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brevundimonas nasdae JCM 11415
NCBI: GCA_016654005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.50	no
125439	motility	BacteriaNetⓘ	yes	72.80	no
125439	gram_stain	BacteriaNetⓘ	negative	94.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	91.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevundimonas nasdae strain JCM 11415
PATRIC: 172043.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.33	yes
125438	anaerobic	anaerobicⓘ	no	89.48	no
125438	spore-forming	spore-formingⓘ	no	88.62	no
125438	aerobic	aerobicⓘ	yes	83.61	yes
125438	thermophilic	thermophileⓘ	no	95.33	yes
125438	flagellated	motile2+ⓘ	yes	59.86	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.	Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.	J Clin Microbiol	10.1128/jcm.00157-08	2008
Phylogeny	Brevundimonas balnearis sp. nov., isolated from the well water of a thermal bath.	Toth E, Szuroczki S, Keki Z, Kosztik J, Makk J, Boka K, Sproer C, Marialigeti K, Schumann P	Int J Syst Evol Microbiol	10.1099/ijsem.0.001746	2017
Phylogeny	Brevundimonas albigilva sp. nov., isolated from forest soil.	Pham VHT, Jeong S, Chung S, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000848	2015
Phylogeny	Sphingomonas yabuuchiae sp. nov. and Brevundimonas nasdae sp. nov., isolated from the Russian space laboratory Mir.	Li Y, Kawamura Y, Fujiwara N, Naka T, Liu H, Huang X, Kobayashi K, Ezaki T	Int J Syst Evol Microbiol	10.1099/ijs.0.02829-0	2004

References

#5390	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14572
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26378	IJSEM 819 2004 ( DOI 10.1099/ijs.0.02829-0 , PubMed 15143030 )
#30014	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26378
#40003	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121235	Collection of Institut Pasteur ; Curators of the CIP; CIP 108442
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevundimonas nasdae (DSM 14572, GTC 1043, JCM 11415)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030814775

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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