Name: Brevundimonas nasdae W1-2B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2310

Type strain:

Species: Brevundimonas nasdae

Strain Designation: W1-2B

Culture col. no.: DSM 14572, GTC 1043, JCM 11415, CGMCC 1.7035, CIP 108442, KCTC 12493

Strain history: CIP <- 2004, JCM <- 2001, T. Ezaki: strain W1-2B

NCBI tax ID(s): 172043 (species)

SI-ID 131535

JCM 11415, DSM 14572, CIP 108442, KCTC 12493, VTT E-072696

Other strains from Brevundimonas nasdae

B. nasdae DSM 100487, TPW 30

Section

Brevundimonas nasdae W1-2B is an aerobe, mesophilic, Gram-negative bacterium that was isolated from condensation water.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Brevundimonas*
	Species	**Brevundimonas nasdae**
	Full Scientific Name (LPSN)	Brevundimonas nasdae Li et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30014]	Gram stain	negative
[Ref.: #121235]	Gram stain	negative

[Ref.: #30014]	Cell length	2.75 µm

[Ref.: #30014]	Cell width	0.5 µm

[Ref.: #30014]	Cell shape	rod-shaped
[Ref.: #121235]	Cell shape	rod-shaped

[Ref.: #30014]	Motility	yes
[Ref.: #121235]	Motility	no

[Ref.: #30014]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5390]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #5390]

Culture medium growth

[Ref.: #5390]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5390]

Culture medium composition

expand / minimize

[Ref.: #5390]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #5390]

Culture medium growth

[Ref.: #5390]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5390]

Culture medium composition

expand / minimize

[Ref.: #40003]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #40003]

Culture medium growth

[Ref.: #40003]

Culture medium composition

expand / minimize

[Ref.: #121235]

Culture medium

CIP Medium 72

[Ref.: #121235]

Culture medium growth

[Ref.: #121235]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5390]		growth	30 °C
[Ref.: #30014]		optimum	30 °C
[Ref.: #40003]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121235]		growth	10-37 °C
[Ref.: #121235]	no	growth	5 °C
[Ref.: #121235]	no	growth	41 °C

[Ref.: #5390]	Temperature range	mesophilic
[Ref.: #30014]	Temperature range	mesophilic
[Ref.: #40003]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #121235]	Temperature range	psychrophilic
[Ref.: #121235]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30014]	Oxygen tolerance	aerobe
[Ref.: #121235]	Oxygen tolerance	obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #30014]	NaCl		growth	<4	%
[Ref.: #121235]	NaCl		growth	0-4	%
[Ref.: #121235]	NaCl	no	growth	6	%
[Ref.: #121235]	NaCl	no	growth	8	%
[Ref.: #121235]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30014]	acetate ChEBI	+	carbon source
[Ref.: #30014]	alanine ChEBI	+	carbon source
[Ref.: #30014]	aspartate ChEBI	+	carbon source
[Ref.: #30014]	decanoate ChEBI	+	carbon source
[Ref.: #30014]	esculin ChEBI	+	hydrolysis
[Ref.: #121235]	esculin ChEBI	+	hydrolysis
[Ref.: #30014]	galactose ChEBI	+	carbon source
[Ref.: #30014]	glucose ChEBI	+	carbon source
[Ref.: #30014]	glutamate ChEBI	+	carbon source
[Ref.: #30014]	malate ChEBI	+	carbon source
[Ref.: #30014]	maltose ChEBI	+	carbon source
[Ref.: #30014]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30014]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #121235]	nitrate ChEBI	-	reduction
[Ref.: #121235]	nitrate ChEBI	-	respiration
[Ref.: #121235]	nitrite ChEBI	-	reduction
[Ref.: #30014]	proline ChEBI	+	carbon source
[Ref.: #30014]	pyruvate ChEBI	+	carbon source
[Ref.: #30014]	succinate ChEBI	+	carbon source
[Ref.: #30014]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121235]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #121235]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121235]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121235]	amylase	+
[Ref.: #121235]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121235]	caseinase	+	3.4.21.50
[Ref.: #30014]	catalase	+	1.11.1.6
[Ref.: #121235]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30014]	cytochrome oxidase	+	1.9.3.1
[Ref.: #121235]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121235]	gelatinase	+/-
[Ref.: #121235]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121235]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121235]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121235]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121235]	oxidase	-
[Ref.: #121235]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #121235]	tryptophan deaminase	-
[Ref.: #121235]	tween esterase	-
[Ref.: #121235]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121235]	2753	not determinedn.d.	-	-	+	-	-	-	+	-	-	+	+	-	-	-	-	+	-	+	+	-	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121235]	11192	-	+	+	+	-	+	+	-	+	+	+	+	+	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5390]	Sample type/isolated from	condensation water
[Ref.: #5390]	Geographic location (country and/or sea, region)	Russian Station Mir
[Ref.: #5390]	Country	Russia
[Ref.: #5390]	Country ISO 3 Code	RUS
[Ref.: #5390]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Condensation water sample from the Russian space station Mir

[Ref.: #121235]	Sample type/isolated from	Environment, Condensation water sample from the Russian space station Mir
[Ref.: #121235]	Country	Russian Federation
[Ref.: #121235]	Country ISO 3 Code	RUS
[Ref.: #121235]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB071954 (>99% sequence identity) for Brevundimonas from Microbeatlas

Aquatic Samples	4334
Soil Samples	1940
Animal Samples	9723
Plant Samples	5191
Total Samples	21188

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5390]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121235]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30014]	Brevundimonas nasdae gene for 16S rRNA, partial sequence	AB071954	1427	GenBank	172043 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevundimonas nasdae JCM 11415	GCA_016654005	contig	GenBank	172043 tax ID	*
[Ref.: #66792]	Brevundimonas nasdae strain JCM 11415	172043.4	wgs	PATRIC	172043 tax ID	*
[Ref.: #66792]	Brevundimonas nasdae DSM 14572	2928222302	draft	JGI IMG/M	172043 tax ID	*

[Ref.: #30014]	GC-content	66.5 mol%
[Ref.: #67770]	GC-content	66.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevundimonas nasdae strain JCM 11415 PATRIC: 172043.4
[Ref.: #69480]	motile	yes	88.691	yes
[Ref.: #69480]	gram-positive	no	98.325	yes
[Ref.: #69480]	anaerobic	no	95.226	no
[Ref.: #69480]	aerobic	yes	78.993	yes
[Ref.: #69480]	halophile	no	96.775	no
[Ref.: #69480]	spore-forming	no	95.595	no
[Ref.: #69480]	glucose-util	yes	81.251	no
[Ref.: #69480]	thermophile	no	99.059	yes
[Ref.: #69480]	flagellated	no	80.695	no
[Ref.: #69480]	glucose-ferment	no	90.264	no

Availability in culture collections External links

[Ref.: #5390]

Culture collection no.

DSM 14572, GTC 1043, JCM 11415, CGMCC 1.7035, CIP 108442, KCTC 12493

[Ref.: #71867]

SI-ID 131535

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevundimonas balnearis sp. nov., isolated from the well water of a thermal bath.	Toth E, Szuroczki S, Keki Z, Kosztik J, Makk J, Boka K, Sproer C, Marialigeti K, Schumann P	Int J Syst Evol Microbiol	10.1099/ijsem.0.001746	2017	*
Phylogeny	Brevundimonas albigilva sp. nov., isolated from forest soil.	Pham VHT, Jeong S, Chung S, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000848	2015	*
Phylogeny	Sphingomonas yabuuchiae sp. nov. and Brevundimonas nasdae sp. nov., isolated from the Russian space laboratory Mir.	Li Y, Kawamura Y, Fujiwara N, Naka T, Liu H, Huang X, Kobayashi K, Ezaki T	Int J Syst Evol Microbiol	10.1099/ijs.0.02829-0	2004	*

References

#5390

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14572

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30014

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26378 (see below)

#40003 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71867

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131535.1 )

#121235 Collection of Institut Pasteur ; Curators of the CIP; CIP 108442

#26378

IJSEM 819 2004 ( DOI 10.1099/ijs.0.02829-0 , PubMed 15143030 )

* These data were automatically processed and therefore are not curated

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Brevundimonas nasdae strain JCM 11415

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