Lactiplantibacillus xiangfangensis (DSM 27103, LMG 26013, NCIMB 14687)

Name: Lactiplantibacillus xiangfangensis (DSM 27103, LMG 26013, NCIMB 14687)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23073

Type strain

Strain Designation 3.1.1

Culture col. no. DSM 27103 LMG 26013 NCIMB 14687 3.1.1 NBRC 108914 2 more

NCBI tax ID(s) 942150

Special Collections DSMZ JCM KCTC Literature strains

History <- LMG <- C. T. Gu, Northeast Agricultural Univ., Harbin, China LMG 26013 <-- C. T. Gu; Northeast Agric. Univ., China; 3.1.1.

Links

Lactiplantibacillus xiangfangensis 3.1.1 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from pickle.

Gram-positive rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 370880

NBRC 108914,LMG 26013,NCIMB 14687,KCTC 21028,JCM 30915,DSM 27103

@ref 20215

Last LPSN update 2026-02-09 11:23:40

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactiplantibacillus

Species Lactiplantibacillus xiangfangensis

Full scientific name Lactiplantibacillus xiangfangensis (Gu et al. 2012) Zheng et al. 2020

Synonyms (1)

Lactobacillus xiangfangensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
30238	positive	rod-shaped
125438	positive		92.665

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19139	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19139	positive	growth	30	mesophilic
30238	positive	optimum	30	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
19139	microaerophile
30238	facultative anaerobe
125439	microaerophile	93.7

Spore formation

30238

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
30238	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
30238	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
30238	28260 ChEBI	galactose	+	carbon source
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
30238	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
30238	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
30238	29864 ChEBI	mannitol	+	carbon source
30238	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
30238	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
30238	15963 ChEBI	ribitol	+	carbon source
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
30238	33942 ChEBI	ribose	+	carbon source
30238	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
30238	30911 ChEBI	sorbitol	+	carbon source
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
30238	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
30238	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
30238	18222 ChEBI	xylose	+	carbon source

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
19139	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+	+	-	-	+	-	-	+	+	+	+	-	-	+	+	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19139	pickle	Heilongjiang Province, Harbin	China	CHN	Asia
67770	Chinese pickle	Heilongjiang Province	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19139	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143884v1 assembly for Lactiplantibacillus xiangfangensis LMG 26013	scaffold	GCA_001438845	942150.3	2700989271	942150	54.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19139	Lactiplantibacillus xiangfangensis strain 3.1.1 16S ribosomal RNA gene, partial sequence	HM443954	1447		942150
124043	Lactobacillus xiangfangensis gene for 16S ribosomal RNA, partial sequence, strain: NBRC 108914.	AB907194	1491		942150

GC content

@ref	GC-content (mol%)	Method
19139	46.6
67770	45.1	genome sequence analysis
67770	46.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactiplantibacillus xiangfangensis LMG 26013
NCBI: GCA_001438845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	62.00	no
125439	motility	BacteriaNetⓘ	no	51.90	no
125439	gram_stain	BacteriaNetⓘ	positive	79.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	93.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus xiangfangensis strain LMG 26013
PATRIC: 942150.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.67	yes
125438	anaerobic	anaerobicⓘ	no	88.15	yes
125438	aerobic	aerobicⓘ	no	96.73	yes
125438	spore-forming	spore-formingⓘ	no	84.41	no
125438	thermophilic	thermophileⓘ	no	95.96	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Lactiplantibacillus paraxiangfangensis sp. nov., isolated from traditional Chinese pickle.	Wang TY, Gu CT.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006278	2024
Phylogeny	Lactobacillus garii sp. nov., isolated from a fermented cassava product.	Diaz M, Sayavedra L, Atter A, Mayer MJ, Saha S, Amoa-Awua W, Narbad A	Int J Syst Evol Microbiol	10.1099/ijsem.0.004121	2020
Phylogeny	Lactobacillus mudanjiangensis sp. nov., Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.054296-0	2013
Phylogeny	Lactobacillus xiangfangensis sp. nov., isolated from Chinese pickle.	Gu CT, Wang F, Li CY, Liu F, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.031468-0	2011

References

#19139	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27103
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26580	IJSEM 860 2012 ( DOI 10.1099/ijs.0.031468-0 , PubMed 21622835 )
#30238	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26580
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lactiplantibacillus xiangfangensis (DSM 27103, LMG 26013, NCIMB 14687)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001438845

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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