Name: Halomonas smyrnensis AAD6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23064

Type strain:

Species: Halomonas smyrnensis

Strain Designation: AAD6

Culture col. no.: DSM 21644, JCM 15723

Strain history: D. Kazan AAD6.

NCBI tax ID(s): 720605 (species)

SI-ID 405309

DSM 21644

Other strains from Halomonas smyrnensis

H. smyrnensis JCM 32860
H. smyrnensis JCM 32863
H. smyrnensis JCM 32865
H. smyrnensis JCM 32867

Section

Halomonas smyrnensis AAD6 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from soil from salt production ponds.

Gram-negative
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas smyrnensis**
	Full Scientific Name (LPSN)	Halomonas smyrnensis Poli et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30480]	Gram stain	negative

[Ref.: #30480]	Cell length	1.6 µm

[Ref.: #30480]	Cell width	1 µm

[Ref.: #30480]	Cell shape	rod-shaped

[Ref.: #30480]	Motility	no

[Ref.: #30480]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19201]

Culture medium

HALOMONAS SYMIRNIENSIS MEDIUM (DSMZ Medium 1158)

[Ref.: #19201]

Culture medium growth

[Ref.: #19201]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19201]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19201]	growth	37 °C
[Ref.: #30480]	growth	05-40 °C
[Ref.: #30480]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #19201]	Temperature range	mesophilic
[Ref.: #30480]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30480]			optimum	7
[Ref.: #30480]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30480]

Oxygen tolerance

facultative aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30480]		NaCl		growth	3-25	%
[Ref.: #30480]		NaCl		optimum	10	%

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30480]	alanine ChEBI	+	carbon source
[Ref.: #30480]	esculin ChEBI	+	hydrolysis
[Ref.: #30480]	fructose ChEBI	+	carbon source
[Ref.: #30480]	galactose ChEBI	+	carbon source
[Ref.: #30480]	glucose ChEBI	+	carbon source
[Ref.: #30480]	maltose ChEBI	+	carbon source
[Ref.: #30480]	mannose ChEBI	+	carbon source
[Ref.: #30480]	serine ChEBI	+	carbon source
[Ref.: #30480]	sucrose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19201]	Sample type/isolated from	soil from salt production ponds
[Ref.: #19201]	Geographic location (country and/or sea, region)	Izmir province, Aegean Region
[Ref.: #19201]	Country	Turkey
[Ref.: #19201]	Country ISO 3 Code	TUR
[Ref.: #19201]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Salty pond soil from Izmir Province, Aegean Region of Turkey
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ131909 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	667
Soil Samples	73
Animal Samples	115
Plant Samples	14
Total Samples	869

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19201]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19201]	Halomonas smyrnensis AAD6 16S ribosomal RNA gene, partial sequence	DQ131909	1445	ENA	339656 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halomonas smyrnensis AAD6	GCA_000265245	contig	GenBank	339656 tax ID
[Ref.: #66792]	Halomonas smyrnensis AAD6	339656.4	wgs	PATRIC	339656 tax ID	*
[Ref.: #66792]	Halomonas smyrnensis AAD6	2551306539	draft	JGI IMG/M	339656 tax ID	*

[Ref.: #19201]	GC-content	63.0 mol%	fluorimetric
[Ref.: #30480]	GC-content	63 mol%
[Ref.: #67770]	GC-content	63 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas smyrnensis AAD6 PATRIC: 339656.4
[Ref.: #69480]	gram-positive	no	97.75	no
[Ref.: #69480]	anaerobic	no	98.435	yes
[Ref.: #69480]	halophile	yes	96.075	no
[Ref.: #69480]	spore-forming	no	96.426	no
[Ref.: #69480]	glucose-util	yes	95.243	no
[Ref.: #69480]	motile	no	75.766	yes
[Ref.: #69480]	aerobic	yes	83.901	yes
[Ref.: #69480]	flagellated	no	83.506	no
[Ref.: #69480]	thermophile	no	98.855	yes
[Ref.: #69480]	glucose-ferment	no	75.536	no

Availability in culture collections External links

[Ref.: #19201]

Culture collection no.

DSM 21644, JCM 15723

[Ref.: #87303]

SI-ID 405309

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium.	Poli A, Nicolaus B, Denizci AA, Yavuzturk B, Kazan D	Int J Syst Evol Microbiol	10.1099/ijs.0.037036-0	2012	*

References

#19201

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21644

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30480

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26814 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87303

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405309.1 )

#26814

IJSEM 10 2013 ( DOI 10.1099/ijs.0.037036-0 , PubMed 22328606 )

* These data were automatically processed and therefore are not curated

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