Brevundimonas bacteroides (DSM 4726, ATCC 15254, CB 7)

Name: Brevundimonas bacteroides (DSM 4726, ATCC 15254, CB 7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2303

Type strain

Strain Designation CB 7

Culture col. no. DSM 4726 ATCC 15254 CB 7 CIP 101031 KCTC 12439 1 more

NCBI tax ID(s) 1121124 74311

Special Collections DSMZ KCTC CIP

History <- ATCC <- J.S. Poindexter, CB 7 CIP <- 1984, ATCC <- J. Stove: strain CB 7

Links

Brevundimonas bacteroides CB 7 is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater lake.

Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 7894

LMG 15096,ATCC 15254,CCRC 14863,CIP 101031,DSM 4726,CCUG 45021,VKM B-1500,BCRC 14863,CCUG 48877,KCTC 12439

@ref 20215

Last LPSN update 2026-02-09 11:18:16

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Caulobacterales

Family Caulobacteraceae

Genus Brevundimonas

Species Brevundimonas bacteroides

Full scientific name Brevundimonas bacteroides (Poindexter 1964) Abraham et al. 1999

Synonyms (1)

Caulobacter bacteroides

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116698	negative	rod-shaped
125439	negative		92.1
125438	negative		97.296

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1732	CAULOBACTER MEDIUM (DSMZ Medium 595)	Medium recipe at MediaDive	Name: CAULOBACTER MEDIUM (DSMZ Medium 595) Composition: Agar 15.0 g/l Bacto peptone 2.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Tap water
38088	MEDIUM 28 - for Caulobacter		Distilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.200 g);Agar (10.000 g);Yeast extract (1.000 g);Peptone (2.000 g)
116698	CIP Medium 28	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1732	positive	growth	28
38088	positive	growth	30
116698	positive	growth	25-41
116698	negative	growth	5
116698	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116698	obligate aerobe
125439	aerobe	98.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116698	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
116698	4853 ChEBI	esculin	+	hydrolysis
116698	17632 ChEBI	nitrate	+	reduction
116698	17632 ChEBI	nitrate	-	respiration
116698	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116698	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116698	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116698	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
116698	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116698	caseinase	+	3.4.21.50
116698	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
116698	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116698	gelatinase	-
116698	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
116698	lipase	-
68382	lipase (C 14)	-		from API zym
116698	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
116698	ornithine decarboxylase	-	4.1.1.17
116698	oxidase	+
116698	protease	+
68382	trypsin	+	3.4.21.4	from API zym
116698	tryptophan deaminase	-
116698	tween esterase	-
116698	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116698	-	+	+	+	-	-	-	-	+	-	+	-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
1732	freshwater lake
116698	Environment, Fresh water lake	California	United States of America	USA	North America	1959

Taxonmaps

69479

Global distribution of 16S sequence AJ227782 (>99% sequence identity) for Brevundimonas bacteroides subclade from Microbeatlas

Aquatic Samples	1540
Soil Samples	569
Animal Samples	1504
Plant Samples	517
Total Samples	4130

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1732	1	Risk group (German classification) According to TRBA 466
116698	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM70144v1 assembly for Brevundimonas bacteroides DSM 4726	scaffold	GCA_000701445	1121124.3	2561511096	1121124	76.43

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Brevundimonas bacteroides gene for 16S rRNA, partial sequence, strain: ATCC15254	AB008513	1214	74311
20218	Caulobacter bacteroides 16S ribosomal RNA, complete	M83796	1421	74311
20218	Brevundimonas bacteroides strain CIP 101031 16S ribosomal RNA gene, partial sequence	EU024136	1260	74311
1732	Brevundimonas bacteroides DNA for 16S ribosomal RNA, strain CB7	AJ227782	1416	74311

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brevundimonas bacteroides DSM 4726
NCBI: GCA_000701445

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	66.90	no
125439	motility	BacteriaNetⓘ	no	60.70	no
125439	gram_stain	BacteriaNetⓘ	negative	92.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevundimonas bacteroides DSM 4726 DSM 4726
NCBI: GCA_000701445.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.30	no
125438	anaerobic	anaerobicⓘ	no	93.27	yes
125438	aerobic	aerobicⓘ	yes	84.50	yes
125438	spore-forming	spore-formingⓘ	no	89.95	no
125438	thermophilic	thermophileⓘ	no	95.87	yes
125438	flagellated	motile2+ⓘ	yes	71.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Production of the Marine Carotenoid Astaxanthin by Metabolically Engineered Corynebacterium glutamicum.	Henke NA, Heider SA, Peters-Wendisch P, Wendisch VF.	Mar Drugs	10.3390/md14070124	2016
Phylogeny	Brevundimonas basaltis sp. nov., isolated from black sand.	Choi JH, Kim MS, Roh SW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.013557-0	2009

References

#1732	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4726
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38088	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116698	Collection of Institut Pasteur ; Curators of the CIP; CIP 101031
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevundimonas bacteroides (DSM 4726, ATCC 15254, CB 7)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000701445

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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