Name: Brevundimonas bacteroides DSM 4726
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2303

Type strain:

Species: Brevundimonas bacteroides

Culture col. no.: DSM 4726, ATCC 15254, CB 7, CIP 101031, KCTC 12439, LMG 15096

Strain history: CIP <- 1984, ATCC <- J. Stove: strain CB 7

NCBI tax ID(s): 1121124 (strain), 74311 (species)

SI-ID 7894

LMG 15096, ATCC 15254, CCRC 14863, CIP 101031, DSM 4726, CCUG 45021, VKM B-1500, BCRC 14863, CCUG 48877, KCTC 12439

Section

Brevundimonas bacteroides DSM 4726 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater lake.

Gram-negative
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Brevundimonas*
	Species	**Brevundimonas bacteroides**
	Full Scientific Name (LPSN)	Brevundimonas bacteroides (Poindexter 1964) Abraham et al. 1999

Synonym

Caulobacter bacteroides

Information on morphological and physiological properties Morphology

[Ref.: #116698]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #116698]	Cell shape	rod-shaped

[Ref.: #116698]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1732]

Culture medium

CAULOBACTER MEDIUM (DSMZ Medium 595)

[Ref.: #1732]

Culture medium growth

[Ref.: #1732]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1732]

Culture medium composition

expand / minimize

[Ref.: #38088]

Culture medium

MEDIUM 28 - for Caulobacter

[Ref.: #38088]

Culture medium growth

[Ref.: #38088]

Culture medium composition

expand / minimize

[Ref.: #116698]

Culture medium

CIP Medium 28

[Ref.: #116698]

Culture medium growth

[Ref.: #116698]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1732]		growth	28 °C
[Ref.: #38088]		growth	30 °C
[Ref.: #116698]		growth	25-41 °C
[Ref.: #116698]	no	growth	5 °C
[Ref.: #116698]	no	growth	10 °C

[Ref.: #1732]	Temperature range	mesophilic
[Ref.: #38088]	Temperature range	mesophilic
[Ref.: #116698]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116698]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.935

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #116698]		NaCl		growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116698]	esculin ChEBI	+	hydrolysis
[Ref.: #116698]	nitrate ChEBI	+	reduction
[Ref.: #116698]	nitrate ChEBI	-	respiration
[Ref.: #116698]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #116698]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116698]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116698]	amylase	-
[Ref.: #116698]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116698]	caseinase	+	3.4.21.50
[Ref.: #116698]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116698]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116698]	gelatinase	-
[Ref.: #116698]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #116698]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116698]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116698]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116698]	oxidase	+
[Ref.: #116698]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116698]	tryptophan deaminase	-
[Ref.: #116698]	tween esterase	-
[Ref.: #116698]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116698]	6664	-	+	+	+	-	-	-	-	+	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1732]	Sample type/isolated from	freshwater lake

[Ref.: #116698]	Sample type/isolated from	Environment, Fresh water lake
[Ref.: #116698]	Geographic location (country and/or sea, region)	California
[Ref.: #116698]	Country	United States of America
[Ref.: #116698]	Country ISO 3 Code	USA
[Ref.: #116698]	Continent	North America
[Ref.: #116698]	Isolation date	1959
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ227782 (>99% sequence identity) for Brevundimonas bacteroides subclade from Microbeatlas

Aquatic Samples	1540
Soil Samples	569
Animal Samples	1504
Plant Samples	517
Total Samples	4130

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1732]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116698]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1732]	Brevundimonas bacteroides DNA for 16S ribosomal RNA, strain CB7	AJ227782	1416	ENA	74311 tax ID
[Ref.: #20218]	Brevundimonas bacteroides gene for 16S rRNA, partial sequence, strain: ATCC15254	AB008513	1214	ENA	74311 tax ID	*
[Ref.: #20218]	Caulobacter bacteroides 16S ribosomal RNA, complete	M83796	1421	ENA	74311 tax ID	*
[Ref.: #20218]	Brevundimonas bacteroides strain CIP 101031 16S ribosomal RNA gene, partial sequence	EU024136	1260	ENA	74311 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevundimonas bacteroides DSM 4726	GCA_000701445	scaffold	GenBank	1121124 tax ID	*
[Ref.: #66792]	Brevundimonas bacteroides DSM 4726	1121124.3	wgs	PATRIC	1121124 tax ID	*
[Ref.: #66792]	Brevundimonas bacteroides DSM 4726	2561511096	draft	JGI IMG/M	1121124 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brevundimonas bacteroides DSM 4726 DSM 4726 NCBI: GCA_000701445.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevundimonas bacteroides DSM 4726 DSM 4726 NCBI: GCA_000701445.1
[Ref.: #69480]	motile	yes	90.516	no
[Ref.: #69480]	flagellated	no	78.76	no
[Ref.: #69480]	gram-positive	no	98.268	no
[Ref.: #69480]	anaerobic	no	97.332	no
[Ref.: #69480]	halophile	no	96.869	no
[Ref.: #69480]	spore-forming	no	94.33	no
[Ref.: #69480]	glucose-util	yes	79.639	no
[Ref.: #69480]	aerobic	yes	87.781	no
[Ref.: #69480]	thermophile	no	97.735	yes
[Ref.: #69480]	glucose-ferment	no	91.65	no

Availability in culture collections External links

[Ref.: #1732]

Culture collection no.

DSM 4726, ATCC 15254, CB 7, CIP 101031, KCTC 12439, LMG 15096

[Ref.: #71860]

SI-ID 7894

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevundimonas basaltis sp. nov., isolated from black sand.	Choi JH, Kim MS, Roh SW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.013557-0	2009	*

References

#1732

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4726

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38088 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71860

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7894.1 )

#116698 Collection of Institut Pasteur ; Curators of the CIP; CIP 101031
* These data were automatically processed and therefore are not curated

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Brevundimonas bacteroides DSM 4726 DSM 4726

Brevundimonas bacteroides DSM 4726 DSM 4726

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