Name: Brevundimonas vesicularis 13alt
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2302

Type strain:

Species: Brevundimonas vesicularis

Strain Designation: 13alt, Kosako 85012, Otto A117

Variant: Colony variant of BacDive ID 2301

Culture col. no.: DSM 7233, ATCC 11426, CCEB 857, CCM 3398, CCUG 2032, CECT 327, IAM 12105, JCM 1477, NCMB 1945, NCTC 10900, Stanier 500, BCRC 11012, CGMCC 1.7034, CIP 101035, DSM 7226, IFO 12165, LMG 2350, NBRC 12165, NCIMB 1945, VKM B-974, VTT E-981070

Strain history: CIP <- 1984, LMG, Pseudomonas vesicularis <- ATCC <- G.J. Jann <- E. Morse <- R.S. Breed <- K. Busing

NCBI tax ID(s): 1349759 (strain), 41276 (species)

SI-ID 85200

LMG 2350, ATCC 11426, CCM 3398, CCUG 2032, CECT 327, IAM 12105, JCM 1477, NCMB 1945, NCTC 10900, CCUG 28332, CCUG 28333, CIP 101035, DSM 7226, DSM 7233, CCRC 11012, IFO 12165, NCIMB 1945, NCIMB 13293, VKM B-974, CCUG 23931, LMD 76.49, NBRC 12165, NCCB 76049, BCRC 11012, CFBP 3032, NCIB 1945, ICMP 2530, KCTC 12421, KACC 11290, CGMCC 1.1787, CGMCC 1.3355, VTT E-981070

Other strains from Brevundimonas vesicularis

Section

Brevundimonas vesicularis 13alt is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Leech , urinary-bladder epithelium.

Gram-negative
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Brevundimonas*
	Species	**Brevundimonas vesicularis**
	Full Scientific Name (LPSN)	Brevundimonas vesicularis (Büsing et al. 1953) Segers et al. 1994

	Synonym	"Corynebacterium* vesiculare"*
	Synonym	Pseudomonas vesicularis

Information on morphological and physiological properties Morphology

[Ref.: #123827]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #123827]	Cell shape	rod-shaped

[Ref.: #123827]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3068]

Culture medium

BLOOD AGAR BASE (OXOID CM55) (DSMZ Medium 617a)

[Ref.: #3068]

Culture medium growth

[Ref.: #3068]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3068]

Culture medium composition

expand / minimize

[Ref.: #3068]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #3068]

Culture medium growth

[Ref.: #3068]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3068]

Culture medium composition

expand / minimize

[Ref.: #123827]

Culture medium

CIP Medium 72

[Ref.: #123827]

Culture medium growth

[Ref.: #123827]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3068]		growth	26 °C
[Ref.: #67770]		growth	26 °C
[Ref.: #123827]		growth	5-30 °C
[Ref.: #123827]	no	growth	37 °C
[Ref.: #123827]	no	growth	41 °C

[Ref.: #3068]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123827]	Temperature range	mesophilic
[Ref.: #123827]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123827]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Salt	Tested relation		Salt conc.
[Ref.: #123827]	NaCl		growth	0-2	%
[Ref.: #123827]	NaCl	no	growth	4	%
[Ref.: #123827]	NaCl	no	growth	6	%
[Ref.: #123827]	NaCl	no	growth	8	%
[Ref.: #123827]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123827]	esculin ChEBI	-	hydrolysis
[Ref.: #123827]	nitrate ChEBI	-	reduction
[Ref.: #123827]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123827]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #123827]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123827]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123827]	amylase	+
[Ref.: #123827]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #123827]	caseinase	+	3.4.21.50
[Ref.: #123827]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123827]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123827]	gelatinase	+/-
[Ref.: #123827]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123827]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123827]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123827]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123827]	oxidase	-
[Ref.: #123827]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123827]	tryptophan deaminase	-
[Ref.: #123827]	tween esterase	-
[Ref.: #123827]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123827]	66	not determinedn.d.	+	-	+	-	-	-	-	-	-	+	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123827]	6667	-	+	+	+	-	+	+	-	+	-	+	+	-	-	+	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3068]	Sample type/isolated from	Leech (Hirudo), urinary-bladder epithelium
[Ref.: #3068]	Host species	Hirudo

[Ref.: #67770]	Sample type/isolated from	Urinary-bladder epithelium of leech (Hirudo)
[Ref.: #67770]	Host species	Hirudo

[Ref.: #123827]	Sample type/isolated from	Animal, Leech, urinary-bladder epithelium
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Annelida
#Host Body-Site	#Urogenital tract	#Bladder

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ007801 (>99% sequence identity) for Brevundimonas from Microbeatlas

Aquatic Samples	4334
Soil Samples	1940
Animal Samples	9723
Plant Samples	5191
Total Samples	21188

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3068]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123827]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Brevundimonas vesicularis 16S rRNA gene	AJ007801	1390	ENA	41276 tax ID	*
[Ref.: #20218]	Brevundimonas vesicularis strain CIP 101035 16S ribosomal RNA gene, partial sequence	EU024137	1260	ENA	41276 tax ID	*
[Ref.: #20218]	Brevundimonas vesicularis gene for 16S rRNA, strain: IAM 12105	AB021414	1450	ENA	41276 tax ID	*
[Ref.: #20218]	Brevundimonas vesicularis DNA for 16S ribosomal RNA, strain LMG 2350 (T)	AJ227780	1416	ENA	41276 tax ID	*
[Ref.: #20218]	Brevundimonas vesicularis gene for 16S rRNA, partial sequence, strain: NBRC 12165	AB680247	1386	ENA	41276 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Brevundimonas vesicularis NBRC 12165	GCA_001592205	contig	GenBank	1349759 tax ID
[Ref.: #66792]	Brevundimonas vesicularis NBRC 12165	1349759.3	wgs	PATRIC	1349759 tax ID	*
[Ref.: #66792]	Brevundimonas vesicularis NBRC 12165	2731957683	draft	JGI IMG/M	1349759 tax ID	*

[Ref.: #67770]

GC-content

65.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brevundimonas vesicularis NBRC 12165 PATRIC: 1349759.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevundimonas vesicularis NBRC 12165 PATRIC: 1349759.3
[Ref.: #69480]	motile	yes	89.844	no
[Ref.: #69480]	gram-positive	no	98.23	no
[Ref.: #69480]	anaerobic	no	97.206	no
[Ref.: #69480]	halophile	no	95.12	no
[Ref.: #69480]	spore-forming	no	95.347	no
[Ref.: #69480]	glucose-util	yes	78.878	no
[Ref.: #69480]	aerobic	yes	90.478	no
[Ref.: #69480]	flagellated	no	80.704	no
[Ref.: #69480]	thermophile	no	99.531	no
[Ref.: #69480]	glucose-ferment	no	92.524	no

Availability in culture collections External links

[Ref.: #3068]

Culture collection no.

DSM 7233, ATCC 11426, CCEB 857, CCM 3398, CCUG 2032, CECT 327, IAM 12105, JCM 1477, NCMB 1945, NCTC 10900, Stanier 500, BCRC 11012, CGMCC 1.7034, CIP 101035, DSM 7226, IFO 12165, LMG 2350, NBRC 12165, NCIMB 1945, VKM B-974, VTT E-981070

[Ref.: #71859]

SI-ID 85200

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevundimonas balnearis sp. nov., isolated from the well water of a thermal bath.	Toth E, Szuroczki S, Keki Z, Kosztik J, Makk J, Boka K, Sproer C, Marialigeti K, Schumann P	Int J Syst Evol Microbiol	10.1099/ijsem.0.001746	2017	*
Phylogeny	Brevundimonas albigilva sp. nov., isolated from forest soil.	Pham VHT, Jeong S, Chung S, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000848	2015	*
Phylogeny	Meganema perideroedes gen. nov., sp. nov., a filamentous alphaproteobacterium from activated sludge.	Thomsen TR, Blackall LL, de Muro MA, Nielsen JL, Nielsen PH	Int J Syst Evol Microbiol	10.1099/ijs.0.02916-0	2006	*
Pathogenicity	Neutralization of Shwartzman-inducing activity by antibodies recognizing the Re core or lipid A structures of lipopolysaccharide from Salmonella minnesota R595 and Pseudomonas vesicularis JCM1477.	Mashimo J, Mizutani T, Mita A, Kasai N	Microbiol Immunol	10.1111/j.1348-0421.1991.tb01573.x	1991	*
Enzymology	[A strain of Pseudomonas vesicularis isolated from shower hose which supports the multiplication of Legionella].	Koide M, Miyata T, Nukina M, Teramoto T, Nakanishi H, Kamiki T, Umeda B, Nakai H	Kansenshogaku Zasshi	10.11150/kansenshogakuzasshi1970.63.1160	1989	*
Phylogeny	Isolation of 9-hydroxy-delta-tetradecalactone from lipid A of Pseudomonas diminuta and Pseudomonas vesicularis.	Arata S, Hirayama T, Kasai N, Itoh T, Ohsawa A	FEMS Microbiol Lett	10.1016/0378-1097(89)90512-0	1989	*
Enzymology	Structural heterogeneity regarding local Shwartzman activity of lipid A.	Mashimo J, Tanaka C, Arata S, Akiyama Y, Hata S, Hirayama T, Egawa K, Kasai N	Microbiol Immunol	10.1111/j.1348-0421.1988.tb01427.x	1988	*

References

#3068

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7233

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71859

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID85200.1 )

#123827 Collection of Institut Pasteur ; Curators of the CIP; CIP 101035
* These data were automatically processed and therefore are not curated

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Brevundimonas vesicularis NBRC 12165

Brevundimonas vesicularis NBRC 12165

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