Brenneria goodwinii (DSM 27058, BCC 845, FRB 141)

Name: Brenneria goodwinii (DSM 27058, BCC 845, FRB 141)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 22995

Type strain

Strain Designation R-43656

Culture col. no. DSM 27058 BCC 845 FRB 141 LMG 26270 NCPPB 4484 1 more

NCBI tax ID(s) 1109412

Special Collections DSMZ Literature strains

History <- LMG <- I. Cleenwerck, Univ. Ghent, Belgium <- T. Coutinho, FABI, University of Pretoria <- S. E. Denman, Centre for Forestry and Climatic Change, Surrey, United Kingdom; FRB 141

Links

Brenneria goodwinii R-43656 is a facultative anaerobe, mesophilic, Gram-negative plant pathogen that was isolated from Quercus robur exhibiting symptoms of acute oak decline.

Gram-negative motile rod-shaped facultative anaerobe mesophilic plant pathogen 16S sequence

Name and taxonomic classification

SI-ID 371027

DSM 27058,LMG 26270,BCC 845,NCPPB 4484,CFBP 8198

@ref 20215

Last LPSN update 2026-02-09 11:23:38

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Pectobacteriaceae

Genus Brenneria

Species Brenneria goodwinii

Full scientific name Brenneria goodwinii Denman et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30518	negative	1.15 µm	0.8 µm	rod-shaped

Pigmentation

30518

Productionyes

Multimedia

@ref:	19177
multimedia content:	DSM_27058.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27058.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19177	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19177	positive	growth	37	mesophilic
30518	positive	growth	10-40

Physiology and metabolism

Oxygen tolerance

30518

Oxygen tolerancefacultative anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
30518	22599 ChEBI	arabinose	+	carbon source
30518	22653 ChEBI	asparagine	+	carbon source
30518	35391 ChEBI	aspartate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
30518	15740 ChEBI	formate	+	carbon source
30518	28757 ChEBI	fructose	+	carbon source
30518	28260 ChEBI	galactose	+	carbon source
30518	24265 ChEBI	gluconate	+	carbon source
30518	17234 ChEBI	glucose	+	carbon source
30518	17754 ChEBI	glycerol	+	carbon source
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
30518	17716 ChEBI	lactose	+	carbon source
68368	25094 ChEBI	lysine	-	degradation	from API 20E
30518	29864 ChEBI	mannitol	+	carbon source
30518	37684 ChEBI	mannose	+	carbon source
30518	28053 ChEBI	melibiose	+	carbon source
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
30518	37657 ChEBI	methyl D-glucoside	+	carbon source
30518	51850 ChEBI	methyl pyruvate	+	carbon source
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
30518	506227 ChEBI	N-acetylglucosamine	+	carbon source
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
30518	16634 ChEBI	raffinose	+	carbon source
30518	17822 ChEBI	serine	+	carbon source
30518	30911 ChEBI	sorbitol	+	carbon source
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
30518	30031 ChEBI	succinate	+	carbon source
30518	17992 ChEBI	sucrose	+	carbon source
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
30518	27082 ChEBI	trehalose	+	carbon source
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CO2 fixation in Crenarchaeota	100	9 of 9
66794	vitamin K metabolism	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	ribulose monophosphate pathway	100	2 of 2
66794	propanol degradation	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	lipoate biosynthesis	100	5 of 5
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	pentose phosphate pathway	100	11 of 11
66794	palmitate biosynthesis	100	22 of 22
66794	acetate fermentation	100	4 of 4
66794	enterobactin biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	acetoin degradation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	quinate degradation	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	serine metabolism	100	9 of 9
66794	sulfopterin metabolism	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	photosynthesis	92.86	13 of 14
66794	glutathione metabolism	92.86	13 of 14
66794	vitamin B6 metabolism	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	NAD metabolism	88.89	16 of 18
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	pyrimidine metabolism	86.67	39 of 45
66794	alanine metabolism	86.21	25 of 29
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	heme metabolism	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	methionine metabolism	84.62	22 of 26
66794	phenylalanine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	glycolysis	82.35	14 of 17
66794	proline metabolism	81.82	9 of 11
66794	degradation of sugar alcohols	81.25	13 of 16
66794	purine metabolism	80.85	76 of 94
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	lipid A biosynthesis	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	butanoate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of sugar acids	72	18 of 25
66794	degradation of pentoses	71.43	20 of 28
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	urea cycle	69.23	9 of 13
66794	cyanate degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	octane oxidation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	sulfoquinovose degradation	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	tryptophan metabolism	65.79	25 of 38
66794	tyrosine metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	lipid metabolism	61.29	19 of 31
66794	degradation of hexoses	61.11	11 of 18
66794	starch degradation	60	6 of 10
66794	3-chlorocatechol degradation	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	hydrogen production	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	lysine metabolism	59.52	25 of 42
66794	histidine metabolism	58.62	17 of 29
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	phenol degradation	55	11 of 20
66794	sulfate reduction	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	sphingosine metabolism	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	daunorubicin biosynthesis	44.44	4 of 9
66794	d-mannose degradation	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	ascorbate metabolism	40.91	9 of 22
66794	gallate degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	carnitine metabolism	37.5	3 of 8
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	coenzyme M biosynthesis	30	3 of 10
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19177	+	+	-	-	-	-	-	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
19177	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
19177	+	+	-	-	-	-	-	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
19177	Quercus robur exhibiting symptoms of acute oak decline	Quercus robur	Leicestershire, Outwood, Loughborough	United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence JN544202 (>99% sequence identity) for Brenneria goodwinii subclade from Microbeatlas

Aquatic Samples	25
Soil Samples	6
Animal Samples	260
Plant Samples	61
Total Samples	352

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
19177		1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Brenneria goodwinii strain LMG 26270 16S ribosomal RNA gene, partial sequence	KM032271	1450		1109412
19177	Brenneria goodwinii strain LMG 26270 16S ribosomal RNA gene, partial sequence	JN544202	1344		1109412

GC content

30518

GC-content (mol%)52.5

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bruguierivorax albus gen. nov. sp. nov. Isolated from Mangrove Sediment and Proposal of Bruguierivoracaceae fam. nov.	Li M, Liu K, Liu Y, Gao C, Yi X	Curr Microbiol	10.1007/s00284-020-02311-w	2021
Phylogeny	Brenneria goodwinii sp. nov., associated with acute oak decline in the UK.	Denman S, Brady C, Kirk S, Cleenwerck I, Venter S, Coutinho T, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.037879-0	2011
Phylogeny	Affinibrenneria salicis gen. nov. sp. nov. isolated from Salix matsudana bark canker.	Bian DR, Xue H, Wang GM, Piao CG, Li Y	Arch Microbiol	10.1007/s00203-021-02323-5	2021
Phylogeny	Brenneria populi sp. nov., isolated from symptomatic bark of Populusxeuramericana canker.	Li Y, Fang W, Xue H, Liang WX, Wang LF, Tian GZ, Wang XZ, Lin CL, Li X, Piao CG	Int J Syst Evol Microbiol	10.1099/ijs.0.066068-0	2014

References

#19177	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27058
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#26850	IJSEM 2451 2012 ( DOI 10.1099/ijs.0.037879-0 , PubMed 22140177 )
#30518	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26850
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Brenneria goodwinii (DSM 27058, BCC 845, FRB 141)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media