Name: Desulfatitalea tepidiphila S28bF
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 22990

Type strain:

Species: Desulfatitalea tepidiphila

Strain Designation: S28bF

Culture col. no.: DSM 23472, NBRC 107166

Strain history: <- Y. Higashioka, Hokkaido University; S28bF

NCBI tax ID(s): 1185843 (species)

SI-ID 402786

DSM 23472

Section

Desulfatitalea tepidiphila S28bF is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from tidal flat sediment.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobacteraceae*
	Genus	*Desulfatitalea*
	Species	**Desulfatitalea tepidiphila**
	Full Scientific Name (LPSN)	Desulfatitalea tepidiphila Higashioka et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30733]	Gram stain	negative

[Ref.: #30733]	Cell length	2.75 µm

[Ref.: #30733]	Cell width	0.55 µm

[Ref.: #30733]	Cell shape	rod-shaped

[Ref.: #30733]	Motility	yes

[Ref.: #19243]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19243]

Culture medium

DESULFUROMUSA MEDIUM (DSMZ Medium 195a)

[Ref.: #19243]

Culture medium growth

[Ref.: #19243]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19243]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19243]	growth	37 °C
[Ref.: #30733]	growth	13-45 °C
[Ref.: #30733]	optimum	38 °C

[Ref.: #19243]	Temperature range	mesophilic
[Ref.: #30733]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30733]			optimum	7.05
[Ref.: #30733]			growth	6.2-7.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19243]	Oxygen tolerance	anaerobe
[Ref.: #30733]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30733]	acetate ChEBI	+	carbon source
[Ref.: #30733]	formate ChEBI	+	carbon source
[Ref.: #30733]	lactate ChEBI	+	carbon source
[Ref.: #30733]	propionate ChEBI	+	carbon source
[Ref.: #30733]	pyruvate ChEBI	+	carbon source
[Ref.: #30733]	succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19243]	Sample type/isolated from	tidal flat sediment
[Ref.: #19243]	Geographic location (country and/or sea, region)	Chiba, Urayasu, Sanban-ze (39° 39.0' N, 139° 55.5' E)
[Ref.: #19243]	Country	Japan
[Ref.: #19243]	Country ISO 3 Code	JPN
[Ref.: #19243]	Continent	Asia
[Ref.: #19243]	Geographic location	35.6420°/139.9030°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB614135 (>99% sequence identity) for Desulfatitalea tepidiphila subclade from Microbeatlas

Aquatic Samples	687
Soil Samples	58
Animal Samples	7
Plant Samples	6
Total Samples	758

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19243]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19243]	Desulfatitalea tepidiphila gene for 16S ribosomal RNA, partial sequence, strain: S28bF	AB614135	1485	ENA	1185843 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfatitalea tepidiphila S28bF	GCA_001293685	contig	GenBank	1185843 tax ID	*
[Ref.: #66792]	Desulfatitalea tepidiphila S28bF	2690315754	draft	JGI IMG/M	1185843 tax ID	*

[Ref.: #19243]	GC-content	56.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30733]	GC-content	56.6 mol%

Availability in culture collections External links

[Ref.: #19243]

Culture collection no.

DSM 23472, NBRC 107166

[Ref.: #87236]

SI-ID 402786

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfatitalea tepidiphila gen. nov., sp. nov., a sulfate-reducing bacterium isolated from tidal flat sediment.	Higashioka Y, Kojima H, Watanabe M, Fukui M	Int J Syst Evol Microbiol	10.1099/ijs.0.043356-0	2012	*
Genetics	Draft Genome Sequence of Desulfatitalea tepidiphila S28bFT.	Higashioka Y, Kojima H, Watanabe T, Fukui M	Genome Announc	10.1128/genomeA.01326-15	2015	*

References

#19243

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23472

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30733

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27064 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87236

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402786.1 )

#27064

IJSEM 761 2013 ( DOI 10.1099/ijs.0.043356-0 , PubMed 22581901 )

* These data were automatically processed and therefore are not curated

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