Name: Brassicibacter mesophilus BM
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 22967

Type strain:

Species: Brassicibacter mesophilus

Strain Designation: BM

Culture col. no.: DSM 24659, JCM 16868

Strain history: W.-W. Zhang strain BM.

NCBI tax ID(s): 745119 (species)

SI-ID 403317

DSM 24659

Section

Brassicibacter mesophilus BM is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from food industry wastewater with high salinity.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Brassicibacter*
	Species	**Brassicibacter mesophilus**
	Full Scientific Name (LPSN)	Brassicibacter mesophilus Fang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30378]	Gram stain	negative

[Ref.: #30378]	Cell length	4.4 µm

[Ref.: #30378]	Cell width	0.45 µm

[Ref.: #30378]	Cell shape	rod-shaped

[Ref.: #30378]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19191]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #19191]

Culture medium growth

[Ref.: #19191]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19191]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19191]	growth	37 °C
[Ref.: #30378]	growth	16-44 °C
[Ref.: #30378]	optimum	37 °C
[Ref.: #67770]	growth	32 °C

[Ref.: #19191]	Temperature range	mesophilic
[Ref.: #30378]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30378]			optimum	7.5
[Ref.: #30378]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19191]	Oxygen tolerance	anaerobe
[Ref.: #30378]	Oxygen tolerance	anaerobe

[Ref.: #30378]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30378]		NaCl		growth	0-8	%
[Ref.: #30378]		NaCl		optimum	1.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30378]	fructose ChEBI	+	carbon source
[Ref.: #30378]	glucose ChEBI	+	carbon source
[Ref.: #30378]	glutamate ChEBI	+	carbon source
[Ref.: #30378]	glycine ChEBI	+	carbon source
[Ref.: #30378]	pyruvate ChEBI	+	carbon source
[Ref.: #30378]	ribose ChEBI	+	carbon source
[Ref.: #30378]	sucrose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30378]		hydrogen sulfide ChEBI	yes
[Ref.: #30378]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30378]		indole ChEBI	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19191]	Sample type/isolated from	food industry wastewater with high salinity
[Ref.: #19191]	Geographic location (country and/or sea, region)	Zhejiang Province, Cixi
[Ref.: #19191]	Country	China
[Ref.: #19191]	Country ISO 3 Code	CHN
[Ref.: #19191]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Food industry wastewater
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	-
#Engineered	#Waste	#Industrial wastewater
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU645013 (>99% sequence identity) for Brassicibacter mesophilus subclade from Microbeatlas

Aquatic Samples	112
Soil Samples	14
Animal Samples	17
Plant Samples	4
Total Samples	147

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19191]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19191]	Brassicibacter mesophilus strain BM 16S ribosomal RNA gene, partial sequence	GU645013	1454	ENA	745119 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brassicibacter mesophilus DSM 24659	2861672352	draft	JGI IMG/M	745119 tax ID	*

[Ref.: #19191]

GC-content

28.2 mol%

Availability in culture collections External links

[Ref.: #19191]

Culture collection no.

DSM 24659, JCM 16868

[Ref.: #87214]

SI-ID 403317

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brassicibacter mesophilus gen. nov., sp. nov., a strictly anaerobic bacterium isolated from food industry wastewater.	Fang MX, Zhang WW, Zhang YZ, Tan HQ, Zhang XQ, Wu M, Zhu XF	Int J Syst Evol Microbiol	10.1099/ijs.0.034660-0	2012	*

References

#19191

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24659

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30378

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26717 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87214

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403317.1 )

#26717

IJSEM 3018 2012 ( DOI 10.1099/ijs.0.034660-0 , PubMed 22307504 )

* These data were automatically processed and therefore are not curated

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