Caloramator quimbayensis (DSM 22093, CMPUJ U833, USBA A)

Name: Caloramator quimbayensis (DSM 22093, CMPUJ U833, USBA A)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 22962

Type strain

Culture col. no. DSM 22093 CMPUJ U833 USBA A

NCBI tax ID(s) 1147123

Special Collections DSMZ Literature strains

History <- B. Patel, Griffith Univ., Nathan Campus, Australia; USBA A <- C. Rubiano {2008}

Links

Caloramator quimbayensis DSM 22093 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from water from a terrestrial thermal spring.

spore-forming Gram-positive motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407502

DSM 22093

@ref 20215

Last LPSN update 2026-02-09 11:23:37

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Caloramator

Species Caloramator quimbayensis

Full scientific name Caloramator quimbayensis Rubiano-Labrador et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30521	positive	2.5 µm	0.9 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19304	CALORAMATOR QUIMBAYENSIS MEDIUM (DSMZ Medium 1477)		Medium recipe at MediaDive	Name: CALORAMATOR QUIMBAYENSIS MEDIUM (DSMZ Medium 1477) Composition: D-Glucose 3.59281 g/l MgCl2 x 6 H2O 1.49701 g/l Yeast extract 0.998004 g/l NH4Cl 0.998004 g/l NaHCO3 0.499002 g/l K2HPO4 0.299401 g/l KH2PO4 0.299401 g/l KCl 0.0998004 g/l Nitrilotriacetic acid 0.0127745 g/l FeCl2 x 4 H2O 0.000998004 g/l NaCl 0.000998004 g/l Sodium resazurin 0.000499002 g/l MnCl2 x 4 H2O 9.98004e-05 g/l NiCl2 x 6 H2O 9.98004e-05 g/l CaCl2 x 2 H2O 9.98004e-05 g/l ZnCl2 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Na2WO4 x 2 H2O 3.99202e-05 g/l CoCl2 x 6 H2O 2.99401e-05 g/l Na2MoO4 x 2 H2O 2.99401e-05 g/l Na2SeO3 x 5 H2O 2.99401e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l CuCl2 1.99601e-05 g/l H3BO3 9.98004e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19304	positive	growth	55
30521	positive	growth	37-55
30521	positive	optimum	50

Culture pH

@ref	Ability	Type	PH
30521	positive	optimum	7
30521	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
19304	anaerobe
30521	anaerobe

Spore formation

30521

Spore formationyes

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30521	16449 ChEBI	alanine	+	carbon source
30521	22599 ChEBI	arabinose	+	carbon source
30521	29016 ChEBI	arginine	+	carbon source
30521	23652 ChEBI	dextrin	+	carbon source
30521	28757 ChEBI	fructose	+	carbon source
30521	17234 ChEBI	glucose	+	carbon source
30521	29987 ChEBI	glutamate	+	carbon source
30521	17306 ChEBI	maltose	+	carbon source
30521	29864 ChEBI	mannitol	+	carbon source
30521	37684 ChEBI	mannose	+	carbon source
30521	17272 ChEBI	propionate	+	carbon source
30521	33942 ChEBI	ribose	+	carbon source
30521	17992 ChEBI	sucrose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30521	16136 ChEBI	hydrogen sulfide

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	glycogen metabolism	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	kanosamine biosynthesis II	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	threonine metabolism	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	d-mannose degradation	88.89	8 of 9
66794	glycolysis	82.35	14 of 17
66794	purine metabolism	80.85	76 of 94
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	pyrimidine metabolism	80	36 of 45
66794	hydrogen production	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	chorismate metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	histidine metabolism	72.41	21 of 29
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	degradation of sugar alcohols	68.75	11 of 16
66794	degradation of sugar acids	68	17 of 25
66794	serine metabolism	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	citric acid cycle	64.29	9 of 14
66794	degradation of pentoses	64.29	18 of 28
66794	d-xylose degradation	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	glycine betaine biosynthesis	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	starch degradation	60	6 of 10
66794	methylglyoxal degradation	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	degradation of hexoses	55.56	10 of 18
66794	proline metabolism	54.55	6 of 11
66794	cysteine metabolism	50	9 of 18
66794	lysine metabolism	50	21 of 42
66794	butanoate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	biotin biosynthesis	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	tetrahydrofolate metabolism	50	7 of 14
66794	lactate fermentation	50	2 of 4
66794	adipate degradation	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	methionine metabolism	50	13 of 26
66794	oxidative phosphorylation	48.35	44 of 91
66794	non-pathway related	47.37	18 of 38
66794	metabolism of disaccharids	45.45	5 of 11
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	propanol degradation	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	lipid metabolism	41.94	13 of 31
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	tryptophan metabolism	39.47	15 of 38
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	pentose phosphate pathway	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	polyamine pathway	34.78	8 of 23
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	sulfate reduction	30.77	4 of 13
66794	leucine metabolism	30.77	4 of 13
66794	vitamin B12 metabolism	26.47	9 of 34
66794	phenol degradation	25	5 of 20
66794	carnitine metabolism	25	2 of 8
66794	methanogenesis from CO2	25	3 of 12
66794	cyclohexanol degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	carotenoid biosynthesis	22.73	5 of 22
66794	ascorbate metabolism	22.73	5 of 22
66794	arachidonic acid metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	-
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19304	water from a terrestrial thermal spring	Risaralda, Parador de Quimbaya hot spring	Colombia	COL	Middle and South America

Taxonmaps

69479

Global distribution of 16S sequence JN648101 (>99% sequence identity) for Caloramator quimbayensis subclade from Microbeatlas

Aquatic Samples	4
Soil Samples
Animal Samples
Plant Samples
Total Samples	4

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19304	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2671180028 annotated assembly for Caloramator quimbayensis USBA 833	scaffold	GCA_900167605	2671180028	1147123	62.75

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19304	Caloramator quimbayensis strain USBA A 16S ribosomal RNA gene, partial sequence	JN648101	1517		1147123

GC content

@ref	GC-content (mol%)	Method
19304	32.6	high performance liquid chromatography (HPLC)
30521	32.6

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Characterization, thermostable mechanism, and molecular docking of a novel glucose-tolerant beta-glucosidase/beta-galactosidase from the GH1 family isolated from Rehai hot spring.	Huang YY, Zhu D, Yang LQ, Ortuzar M, Yang ZF, Lv ZH, Xie KQ, Jiang HC, Li WJ, Yin YR.	Front Microbiol	10.3389/fmicb.2025.1559242	2025
Metabolism	Enrichment of syngas-converting communities from a multi-orifice baffled bioreactor.	Arantes AL, Alves JI, Stams AJM, Alves MM, Sousa DZ.	Microb Biotechnol	10.1111/1751-7915.12864	2018
	Fermentation of Mannitol Extracts From Brown Macro Algae by Thermophilic Clostridia.	Chades T, Scully SM, Ingvadottir EM, Orlygsson J.	Front Microbiol	10.3389/fmicb.2018.01931	2018
Phylogeny	Caloramator quimbayensis sp. nov., an anaerobic, moderately thermophilic bacterium isolated from a terrestrial hot spring.	Rubiano-Labrador C, Baena S, Diaz-Cardenas C, Patel BKC	Int J Syst Evol Microbiol	10.1099/ijs.0.037937-0	2012

References

#19304	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22093
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26853	IJSEM 1396 2013 ( DOI 10.1099/ijs.0.037937-0 , PubMed 22843719 )
#30521	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26853
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caloramator quimbayensis (DSM 22093, CMPUJ U833, USBA A)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900167605

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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