Thiocapsa imhoffii | Type strain | DSM 21303, SC 5 | BacDiveID:22961

Strain identifier

BacDive ID: 22961

Type strain:

Species: Thiocapsa imhoffii

Culture col. no.: DSM 21303, SC 5

Strain history: <- M. T. Madigan, Dept. Microbiology, Southern Illinois Univ., Carbondale, USA; SC5 <- M. Asao

NCBI tax ID(s): 382777 (species)

Section

Thiocapsa imhoffii DSM 21303 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Soap Lake.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Thiocapsa*
	Species	"Thiocapsa imhoffii"
	Full Scientific Name (LPSN)	Thiocapsa imhoffii Asao et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

1/2 S° HELIORESTIS MEDIUM (DSMZ Medium 1381)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19174]			growth	28 °C

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19174]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.776

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19174]	Sample type/isolated from	Soap Lake
[Ref.: #19174]	Geographic location (country and/or sea, region)	Central Washington State
[Ref.: #19174]	Country	USA
[Ref.: #19174]	Country ISO 3 Code	USA
[Ref.: #19174]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-

What are isolation sources categories?

Global distribution of 16S sequence DQ498828 (>99% sequence identity) for Thiocapsa imhoffii subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	10

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19174]	Thiocapsa imhoffii strain SC5 16S ribosomal RNA gene, partial sequence	DQ498828	1527	ENA	382777 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thiocapsa imhoffii DSM 21303	GCA_016583985	contig	GenBank	382777 tax ID	*
[Ref.: #66792]	Thiocapsa imhoffii strain DSM 21303	382777.4	wgs	PATRIC	382777 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thiocapsa imhoffii strain DSM 21303 PATRIC: 382777.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thiocapsa imhoffii strain DSM 21303 PATRIC: 382777.4
[Ref.: #69480]	gram-positive	no	99.011	no
[Ref.: #69480]	anaerobic	yes	96.302	yes
[Ref.: #69480]	halophile	no	74.428	no
[Ref.: #69480]	spore-forming	no	92.814	no
[Ref.: #69480]	glucose-util	yes	73.184	no
[Ref.: #69480]	aerobic	no	94.335	yes
[Ref.: #69480]	motile	no	84.706	no
[Ref.: #69480]	flagellated	no	93.402	no
[Ref.: #69480]	thermophile	no	98.795	yes
[Ref.: #69480]	glucose-ferment	no	82.921	no

Availability in culture collections External links

Culture collection no.

DSM 21303, SC 5

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thiocapsa imhoffii, sp. nov., an alkaliphilic purple sulfur bacterium of the family Chromatiaceae from Soap Lake, Washington (USA).	Asao M, Takaichi S, Madigan MT	Arch Microbiol	10.1007/s00203-007-0287-9	2007	*

References

#19174

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21303

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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