Caryophanon tenue (DSM 14152, ATCC 33098, NCDO 2324)

Name: Caryophanon tenue (DSM 14152, ATCC 33098, NCDO 2324)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2293

Type strain

Culture col. no. DSM 14152 ATCC 33098 NCDO 2324 NCIB 9535

NCBI tax ID(s) 33978

Special Collections DSMZ

History <- NCIMB; NCIB 9535 <-V.I. Kudriazev, USSR Academy of Science

Links

Caryophanon tenue DSM 14152 is a bacterium that was isolated from cow manure.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 9077

LMG 17313,ATCC 33098,NCIMB 9535,NCIB 9535,NCDO2324,VKM B-106,KCTC 3404

@ref 20215

Last LPSN update 2026-02-09 11:18:15

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Caryophanon

Species Caryophanon tenue

Full scientific name Caryophanon tenue (ex Peshkoff 1939) Trentini 1988

Synonyms (1)

"Caryophanon tenue"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5234	CARYOPHANON LATUM MEDIUM (DSMZ Medium 34)		Medium recipe at MediaDive	Name: CARYOPHANON LATUM MEDIUM (DSMZ Medium 34) Composition: Soy peptone 2.0 g/l Yeast extract 2.0 g/l Trypticase 2.0 g/l K2HPO4 1.0 g/l Na-acetate 1.0 g/l MgSO4 x 7 H2O 0.27 g/l Na glutamate 0.1 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Biotin 5e-05 g/l Tris-HCl buffer

Culture temp

@ref	Growth	Type	Temperature (°C)
5234	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	90.2

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	ethanol fermentation	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	vitamin K metabolism	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	suberin monomers biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	propanol degradation	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	NAD metabolism	83.33	15 of 18
66794	lipoate biosynthesis	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	allantoin degradation	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	71.28	67 of 94
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	starch degradation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	pyrimidine metabolism	68.89	31 of 45
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	lysine metabolism	64.29	27 of 42
66794	proline metabolism	63.64	7 of 11
66794	pentose phosphate pathway	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	alanine metabolism	62.07	18 of 29
66794	histidine metabolism	62.07	18 of 29
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	factor 420 biosynthesis	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	lipid metabolism	58.06	18 of 31
66794	tryptophan metabolism	57.89	22 of 38
66794	glutathione metabolism	57.14	8 of 14
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	oxidative phosphorylation	56.04	51 of 91
66794	cysteine metabolism	55.56	10 of 18
66794	phenol degradation	55	11 of 20
66794	urea cycle	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	butanoate fermentation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	ketogluconate metabolism	50	4 of 8
66794	glycogen biosynthesis	50	2 of 4
66794	degradation of sugar acids	48	12 of 25
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	d-mannose degradation	44.44	4 of 9
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	sulfate reduction	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	cholesterol biosynthesis	36.36	4 of 11
66794	vitamin B6 metabolism	36.36	4 of 11
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	vitamin B12 metabolism	32.35	11 of 34
66794	ascorbate metabolism	31.82	7 of 22
66794	coenzyme M biosynthesis	30	3 of 10
66794	degradation of pentoses	28.57	8 of 28
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	CMP-KDO biosynthesis	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	biotin biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	nitrate assimilation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	degradation of hexoses	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

5234

Sample typecow manure

Taxonmaps

69479

Global distribution of 16S sequence AJ491303 (>99% sequence identity) for Caryophanon tenue subclade from Microbeatlas

Aquatic Samples	76
Soil Samples	186
Animal Samples	811
Plant Samples	26
Total Samples	1099

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5234	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM170031v1 assembly for Caryophanon tenue DSM 14152	contig	GCA_001700315	33978.4	2887284248	33978	65.68

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	C.tenue (NCDO 2324) 16S rRNA	X70315	1492	33978
5234	Caryophanon tenue 16S rRNA gene, type strain DSM 14152T	AJ491303	1524	33978
124043	Caryophanon tenue DNA containing 16S-23S intergenic spacer region, strain DSM 14152	LN998122	467	33978

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Caryophanon tenue DSM 14152
NCBI: GCA_001700315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	77.50	no
125439	motility	BacteriaNetⓘ	yes	74.50	no
125439	gram_stain	BacteriaNetⓘ	variable	73.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Caryophanon tenue strain DSM 14152
PATRIC: 33978.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.21	no
125438	anaerobic	anaerobicⓘ	no	97.36	no
125438	spore-forming	spore-formingⓘ	yes	65.90	no
125438	aerobic	aerobicⓘ	yes	85.43	no
125438	thermophilic	thermophileⓘ	no	87.99	no
125438	flagellated	motile2+ⓘ	yes	81.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characteristics of Inorganic Phosphate-Solubilizing Bacteria from the Sediments of a Eutrophic Lake.	Li Y, Zhang J, Zhang J, Xu W, Mou Z.	Int J Environ Res Public Health	10.3390/ijerph16122141	2019
Phylogeny	Phylogenetic profiling of bacterial community from two intimately located sites in Balramgari, North-East coast of India.	Gupta AK, Rangrez AY, Verma P, Chatterji A, Shouche YS.	Indian J Microbiol	10.1007/s12088-009-0034-9	2009

References

#5234	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14152
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caryophanon tenue (DSM 14152, ATCC 33098, NCDO 2324)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001700315

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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