Name: Robertmurraya kyonggiensis NB22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 22923

Type strain:

Species: Robertmurraya kyonggiensis

Strain Designation: NB22

Culture col. no.: DSM 26768, JCM 17569, KEMB 5401-267

Strain history: S.-S. Lee NB22.

NCBI tax ID(s): 1037680 (species)

SI-ID 402320

DSM 26768

Section

Robertmurraya kyonggiensis NB22 is a spore-forming, mesophilic, motile bacterium that was isolated from soil of a lettuce field.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Robertmurraya*
	Species	**Robertmurraya kyonggiensis**
	Full Scientific Name (LPSN)	Robertmurraya kyonggiensis Gupta et al. 2020

Synonym

"Bacillus kyonggiensis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %98.112

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19238]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #19238]

Culture medium growth

[Ref.: #19238]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19238]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19238]	Sample type/isolated from	soil of a lettuce field
[Ref.: #19238]	Geographic location (country and/or sea, region)	Kyonggi Province
[Ref.: #19238]	Country	Republic of Korea
[Ref.: #19238]	Country ISO 3 Code	KOR
[Ref.: #19238]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of a lettuce field in Kyonggi Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF896450 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	12
Soil Samples	58
Animal Samples	57
Plant Samples	12
Total Samples	139

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19238]	Bacillus kyonggiensis strain NB22 16S ribosomal RNA gene, partial sequence	JF896450	1463	ENA	1037680 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Robertmurraya kyonggiensis NB22	GCA_005116465	contig	GenBank	1037680 tax ID
[Ref.: #66792]	Bacillus kyonggiensis strain NB22	1037680.4	wgs	PATRIC	1037680 tax ID	*

[Ref.: #19238]	GC-content	36.3 mol%
[Ref.: #67770]	GC-content	36.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus kyonggiensis strain NB22 PATRIC: 1037680.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus kyonggiensis strain NB22 PATRIC: 1037680.4
[Ref.: #69480]	motile	yes	90.096	no
[Ref.: #69480]	flagellated	yes	85.47	no
[Ref.: #69480]	gram-positive	yes	88.981	no
[Ref.: #69480]	anaerobic	no	98.475	no
[Ref.: #69480]	aerobic	yes	86.218	no
[Ref.: #69480]	halophile	no	71.921	no
[Ref.: #69480]	spore-forming	yes	94.989	no
[Ref.: #69480]	thermophile	no	98.276	no
[Ref.: #69480]	glucose-util	yes	85.838	no
[Ref.: #69480]	glucose-ferment	no	85.76	no

Availability in culture collections External links

[Ref.: #19238]

Culture collection no.

DSM 26768, JCM 17569, KEMB 5401-267

[Ref.: #87171]

SI-ID 402320

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species.	Gupta RS, Patel S, Saini N, Chen S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004475	2020	*
Phylogeny	Bacillus kyonggiensis sp. nov., isolated from soil of a lettuce field.	Dong K, Lee S	J Microbiol	10.1007/s12275-011-1218-7	2011	*

References

#19238

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26768

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87171

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402320.1 )

* These data were automatically processed and therefore are not curated

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Bacillus kyonggiensis strain NB22

Bacillus kyonggiensis strain NB22

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