Name: Cytobacillus eiseniae A1-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 22922

Type strain:

Species: Cytobacillus eiseniae

Strain Designation: A1-2

Culture col. no.: DSM 26675, JCM 16993, KCCM 90092

Strain history: K. S. Chung A1-2.

NCBI tax ID(s): 762947 (species)

SI-ID 400715

DSM 26675

Section

Cytobacillus eiseniae A1-2 is a mesophilic bacterium that was isolated from intestinal tract of an earthworm .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Cytobacillus*
	Species	**Cytobacillus eiseniae**
	Full Scientific Name (LPSN)	Cytobacillus eiseniae (Hong et al. 2012) Patel and Gupta 2020

Synonym

Bacillus eiseniae

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19165]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #19165]

Culture medium growth

[Ref.: #19165]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19165]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19165]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #19165]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19165]	Sample type/isolated from	intestinal tract of an earthworm (Eisenia fetida L.)
[Ref.: #19165]	Host species	Eisenia fetida
[Ref.: #19165]	Country	Republic of Korea
[Ref.: #19165]	Country ISO 3 Code	KOR
[Ref.: #19165]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Intestinal tract of an earthworm (Eisenia fetida L.)
[Ref.: #67770]	Host species	Eisenia fetida L.
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Annelida
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM035089 (>99% sequence identity) for Cytobacillus from Microbeatlas

Aquatic Samples	66
Soil Samples	304
Animal Samples	148
Plant Samples	86
Total Samples	604

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19165]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19165]	Bacillus eiseniae strain A1-2 16S ribosomal RNA gene, partial sequence	HM035089	1519	ENA	762947 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cytobacillus eiseniae DSM 26675	GCA_017874625	contig	GenBank	762947 tax ID	*
[Ref.: #66792]	Cytobacillus eiseniae strain DSM 26675	762947.7	wgs	PATRIC	762947 tax ID	*
[Ref.: #66792]	Cytobacillus eiseniae DSM 26675	2913480993	draft	JGI IMG/M	762947 tax ID	*

[Ref.: #19165]	GC-content	38.5 mol%
[Ref.: #67770]	GC-content	38.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cytobacillus eiseniae strain DSM 26675 PATRIC: 762947.7
[Ref.: #69480]	motile	yes	89.69	no
[Ref.: #69480]	flagellated	yes	80.953	no
[Ref.: #69480]	gram-positive	yes	92.103	no
[Ref.: #69480]	anaerobic	no	98.345	no
[Ref.: #69480]	aerobic	yes	88.36	no
[Ref.: #69480]	halophile	no	69.06	no
[Ref.: #69480]	spore-forming	yes	96.363	no
[Ref.: #69480]	glucose-util	yes	85.47	no
[Ref.: #69480]	thermophile	no	90.205	yes
[Ref.: #69480]	glucose-ferment	no	91.481	no

Availability in culture collections External links

[Ref.: #19165]

Culture collection no.

DSM 26675, JCM 16993, KCCM 90092

[Ref.: #87170]

SI-ID 400715

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus ciccensis sp. nov., isolated from maize (Zea mays L.) seeds.	Liu Y, Li N, Eom MK, Schumann P, Zhang X, Cao Y, Ge Y, Xiao M, Zhao J, Cheng C, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002341	2017	*
Phylogeny	Bacillus praedii sp. nov., isolated from purplish paddy soil.	Liu B, Liu GH, Sengonca C, Schumann P, Wang JP, Zhu YJ, Liu QY, Wang MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002030	2017	*
Phylogeny	Bacillus solani sp. nov., isolated from rhizosphere soil of a potato field.	Liu B, Liu GH, Sengonca C, Schumann P, Ge CB, Wang JP, Cui WD, Lin NQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000539	2015	*
Phylogeny	Bacillus eiseniae sp. nov., a swarming, moderately halotolerant bacterium isolated from the intestinal tract of an earthworm (Eisenia fetida L.).	Hong SW, Park JM, Kim SJ, Chung KS	Int J Syst Evol Microbiol	10.1099/ijs.0.034892-0	2011	*

References

#19165

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26675

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87170

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400715.1 )

* These data were automatically processed and therefore are not curated

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Cytobacillus eiseniae strain DSM 26675

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