Cytobacillus eiseniae (DSM 26675, JCM 16993, KCCM 90092)

Name: Cytobacillus eiseniae (DSM 26675, JCM 16993, KCCM 90092)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 22922

Type strain

Strain Designation A1-2

Culture col. no. DSM 26675 JCM 16993 KCCM 90092 A1-2

NCBI tax ID(s) 762947

Special Collections DSMZ JCM

History <- JCM <- K. S. Chung; A1-2 K. S. Chung A1-2.

Links

Cytobacillus eiseniae A1-2 is a mesophilic prokaryote that was isolated from intestinal tract of an earthworm .

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400715

JCM 16993,DSM 26675

@ref 20215

Last LPSN update 2025-12-16 09:52:32

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Cytobacillaceae

Genus Cytobacillus

Species Cytobacillus eiseniae

Full scientific name Cytobacillus eiseniae (Hong et al. 2012) Patel and Gupta 2020

Synonyms (1)

Bacillus eiseniae

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19165	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19165	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.7

Spore formation

@ref	Spore formation	Confidence
125439		90.2
125438		90.509

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Annelida
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
19165	intestinal tract of an earthworm (Eisenia fetida L.)	Eisenia fetida	Republic of Korea	KOR	Asia
67770	Intestinal tract of an earthworm (Eisenia fetida L.)	Eisenia fetida L.	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HM035089 (>99% sequence identity) for Cytobacillus from Microbeatlas

Aquatic Samples	66
Soil Samples	304
Animal Samples	148
Plant Samples	86
Total Samples	604

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19165	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1787462v1 assembly for Cytobacillus eiseniae DSM 26675	contig	GCA_017874625	762947.7	2913480993	762947	64.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19165	Bacillus eiseniae strain A1-2 16S ribosomal RNA gene, partial sequence	HM035089	1519		762947

GC content

@ref	GC-content (mol%)	Method
19165	38.5
67770	38.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cytobacillus eiseniae DSM 26675
NCBI: GCA_017874625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	90.20	no
125439	motility	BacteriaNetⓘ	yes	85.40	no
125439	gram_stain	BacteriaNetⓘ	variable	82.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cytobacillus eiseniae strain DSM 26675
PATRIC: 762947.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.24	no
125438	anaerobic	anaerobicⓘ	no	93.13	no
125438	aerobic	aerobicⓘ	yes	74.46	no
125438	spore-forming	spore-formingⓘ	yes	90.51	no
125438	thermophilic	thermophileⓘ	no	86.80	yes
125438	flagellated	motile2+ⓘ	yes	80.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus ciccensis sp. nov., isolated from maize (Zea mays L.) seeds.	Liu Y, Li N, Eom MK, Schumann P, Zhang X, Cao Y, Ge Y, Xiao M, Zhao J, Cheng C, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002341	2017
Phylogeny	Bacillus praedii sp. nov., isolated from purplish paddy soil.	Liu B, Liu GH, Sengonca C, Schumann P, Wang JP, Zhu YJ, Liu QY, Wang MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002030	2017
Phylogeny	Bacillus solani sp. nov., isolated from rhizosphere soil of a potato field.	Liu B, Liu GH, Sengonca C, Schumann P, Ge CB, Wang JP, Cui WD, Lin NQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000539	2015
Phylogeny	Bacillus eiseniae sp. nov., a swarming, moderately halotolerant bacterium isolated from the intestinal tract of an earthworm (Eisenia fetida L.).	Hong SW, Park JM, Kim SJ, Chung KS	Int J Syst Evol Microbiol	10.1099/ijs.0.034892-0	2011

References

#19165	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26675
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cytobacillus eiseniae (DSM 26675, JCM 16993, KCCM 90092)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017874625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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