Name: Paenalcaligenes hominis SU902
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 22906

Type strain:

Species: Paenalcaligenes hominis

Strain Designation: SU902

Culture col. no.: DSM 26613, CCUG 53761, CCUG 53761 A, CCM 7698, CIP 110145

Strain history: CIP <- 2010, CCUG <- 2006, H. Karlström, , SU, Göteborg, Sweden: strain SU902

NCBI tax ID(s): 643674 (species)

SI-ID 303464

CCUG 53761 A, CCM 7698, CIP 110145, CCUG 53761, DSM 26613

Other strains from Paenalcaligenes hominis

P. hominis

Section

Paenalcaligenes hominis SU902 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from 85-year-old woman, human blood.

Gram-negative
motile
rod-shaped
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Paenalcaligenes*
	Species	**Paenalcaligenes hominis**
	Full Scientific Name (LPSN)	Paenalcaligenes hominis Kämpfer et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29591]	Gram stain	negative
[Ref.: #119950]	Gram stain	negative

[Ref.: #29591]	Cell length	1.65 µm

[Ref.: #29591]	Cell width	0.5 µm

[Ref.: #29591]	Cell shape	rod-shaped
[Ref.: #119950]	Cell shape	rod-shaped

[Ref.: #29591]	Motility	yes
[Ref.: #119950]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19103]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #19103]

Culture medium growth

[Ref.: #19103]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19103]

Culture medium composition

expand / minimize

[Ref.: #39841]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #39841]

Culture medium growth

[Ref.: #39841]

Culture medium composition

expand / minimize

[Ref.: #119950]

Culture medium

CIP Medium 6

[Ref.: #119950]

Culture medium growth

[Ref.: #119950]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #19103]	growth	28 °C
[Ref.: #29591]	growth	25-42 °C
[Ref.: #39841]	growth	37 °C
[Ref.: #60003]	growth	37 °C

[Ref.: #19103]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29591]	Oxygen tolerance	aerobe
[Ref.: #60003]	Oxygen tolerance	aerobe
[Ref.: #119950]	Oxygen tolerance	obligate aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29591]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #29591]	lactate ChEBI	+	carbon source
[Ref.: #119950]	nitrate ChEBI	-	reduction
[Ref.: #119950]	nitrite ChEBI	-	reduction
[Ref.: #29591]	pyruvate ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #119950]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119950]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29591]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119950]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119950]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #60003]

Fatty acid	Percentage	ECL
C16:1 ω7c	34.1	15.819
C16:0	24.6	16
C18:1 ω7c /12t/9t	18.7	17.824
C17:0 CYCLO	10.7	16.888
C14:0 3OH/C16:1 ISO I	7.2	15.485
C12:0	3	12
C18:0	1.7	18

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119950]	12395	-	-	+	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19103]	Sample type/isolated from	85-year-old woman, human blood
[Ref.: #19103]	Country	Sweden
[Ref.: #19103]	Country ISO 3 Code	SWE
[Ref.: #19103]	Continent	Europe

[Ref.: #60003]	Sample type/isolated from	Human blood,85-yr-old woman
[Ref.: #60003]	Sampling date	2006
[Ref.: #60003]	Country	Sweden
[Ref.: #60003]	Country ISO 3 Code	SWE
[Ref.: #60003]	Continent	Europe

[Ref.: #119950]	Sample type/isolated from	Human, Blood
[Ref.: #119950]	Geographic location (country and/or sea, region)	Göteborg
[Ref.: #119950]	Country	Sweden
[Ref.: #119950]	Country ISO 3 Code	SWE
[Ref.: #119950]	Continent	Europe
[Ref.: #119950]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Host	#Human	#Female
#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN391024 (>99% sequence identity) for Paenalcaligenes hominis subclade from Microbeatlas

Aquatic Samples	286
Soil Samples	230
Animal Samples	1119
Plant Samples	77
Total Samples	1712

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19103]	Pathogenicity (human)	yes, in single cases
[Ref.: #19103]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119950]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19103]	Alcaligenaceae bacterium CCUG 53761 partial 16S rRNA gene, type strain CCUG 53761T	FN391024	1613	ENA	643674 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenalcaligenes hominis DSM 26613	GCA_011927625	scaffold	GenBank	643674 tax ID	*
[Ref.: #66792]	Paenalcaligenes hominis CCM 7698	GCA_014635265	contig	GenBank	643674 tax ID	*
[Ref.: #66792]	Paenalcaligenes hominis strain CCM 7698	643674.9	wgs	PATRIC	643674 tax ID	*
[Ref.: #66792]	Paenalcaligenes hominis strain DSM 26613	643674.8	wgs	PATRIC	643674 tax ID	*
[Ref.: #66792]	Paenalcaligenes hominis DSM 26613	2829723600	draft	JGI IMG/M	643674 tax ID	*

[Ref.: #29591]

GC-content

57 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenalcaligenes hominis DSM 26613 NCBI: GCA_011927625.1
[Ref.: #69480]	motile	yes	86.853	yes
[Ref.: #69480]	flagellated	no	54.422	no
[Ref.: #69480]	gram-positive	no	98.382	no
[Ref.: #69480]	anaerobic	no	97.363	yes
[Ref.: #69480]	aerobic	yes	88.755	yes
[Ref.: #69480]	halophile	no	75.425	no
[Ref.: #69480]	spore-forming	no	95.945	no
[Ref.: #69480]	thermophile	no	97.771	no
[Ref.: #69480]	glucose-util	no	78.243	no
[Ref.: #69480]	glucose-ferment	no	88.415	no

Availability in culture collections External links

[Ref.: #19103]

Culture collection no.

DSM 26613, CCUG 53761, CCUG 53761 A, CCM 7698, CIP 110145

[Ref.: #87154]

SI-ID 303464

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenalcaligenes suwonensis sp. nov., isolated from spent mushroom compost.	Moon JY, Lim JM, Ahn JH, Weon HY, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.058412-0	2013	*
Phylogeny	Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.	Kampfer P, Falsen E, Langer S, Lodders N, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.016576-0	2009	*
Phylogeny	Paenalcaligenes niemegkensis sp. nov., a novel species of the family Alcaligenaceae isolated from plastic waste.	Mitzscherling J, MacLean J, Lipus D, Bartholomaus A, Mangelsdorf K, Lipski A, Roddatis V, Liebner S, Wagner D	Int J Syst Evol Microbiol	10.1099/ijsem.0.005333	2022	*
Phylogeny	Paenalcaligenes hermetiae sp. nov., isolated from the larval gut of Hermetia illucens (Diptera: Stratiomyidae), and emended description of the genus Paenalcaligenes.	Lee YY, Lee JK, Park KH, Kim SY, Roh SW, Lee SB, Choi Y, Lee SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.049098-0	2013	*

References

#19103

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26613

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29591

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25983 (see below)

#39841 ; Curators of the CIP;
#60003 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53761 A

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87154

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID303464.1 )

#119950 Collection of Institut Pasteur ; Curators of the CIP; CIP 110145

#25983

IJSEM 1537 2010 ( DOI 10.1099/ijs.0.016576-0 , PubMed 19684310 )

* These data were automatically processed and therefore are not curated

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Paenalcaligenes hominis DSM 26613

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