Name: Trichococcus patagoniensis PmagG1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2284

Type strain:

Species: Trichococcus patagoniensis

Strain Designation: PmagG1

Culture col. no.: DSM 18806, ATCC BAA-756, CIP 108035, JCM 12176

Strain history: CIP <- 2003, E. Pikuta, NSSTC/NASA, Huntsville, Alabama, USA: strain PmagG1

NCBI tax ID(s): 382641 (species)

SI-ID 201778

ATCC BAA-756, CIP 108035, JCM 12176, DSM 18806

Special Collections

Section

Trichococcus patagoniensis PmagG1 is an aerobe bacterium that was isolated from Guano of magellanic penguin.

aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Trichococcus*
	Species	**Trichococcus patagoniensis**
	Full Scientific Name (LPSN)	Trichococcus patagoniensis Pikuta et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #121629]	Gram stain	positive

[Ref.: #121629]	Cell shape	coccus-shaped

[Ref.: #121629]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7708]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #7708]

Culture medium growth

[Ref.: #7708]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7708]

Culture medium composition

expand / minimize

[Ref.: #7708]

Culture medium

ACETOMICROBIUM FAECALIS MEDIUM (DSMZ Medium 412)

[Ref.: #7708]

Culture medium growth

[Ref.: #7708]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7708]

Culture medium composition

expand / minimize

[Ref.: #33873]

Culture medium

MEDIUM 494 - for Trichococcus sp.

[Ref.: #33873]

Culture medium growth

[Ref.: #33873]

Culture medium composition

expand / minimize

[Ref.: #121629]

Culture medium

CIP Medium 494

[Ref.: #121629]

Culture medium growth

[Ref.: #121629]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7708]	growth	30 °C
[Ref.: #33873]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7708]	Oxygen tolerance	aerobe
[Ref.: #7708]	Oxygen tolerance	anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7708]	Sample type/isolated from	Guano of magellanic penguin
[Ref.: #7708]	Geographic location (country and/or sea, region)	Patagonia
[Ref.: #7708]	Country	Chile
[Ref.: #7708]	Country ISO 3 Code	CHL
[Ref.: #7708]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Guano of Magellanic penguins collected in Chilean Patagonia

[Ref.: #121629]	Sample type/isolated from	Guano of magellanic penguin
[Ref.: #121629]	Geographic location (country and/or sea, region)	Patagonia
[Ref.: #121629]	Country	Chile
[Ref.: #121629]	Country ISO 3 Code	CHL
[Ref.: #121629]	Continent	Middle and South America
[Ref.: #121629]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF394926 (>99% sequence identity) for Trichococcus from Microbeatlas

Aquatic Samples	19650
Soil Samples	4890
Animal Samples	13208
Plant Samples	929
Total Samples	38677

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7708]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121629]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7708]	Trichococcus patagoniensis strain PMagG1 16S ribosomal RNA gene, partial sequence	AF394926	1483	GenBank ENA	382641 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Trichococcus patagoniensis DSM 18806	GCA_003051085	scaffold	GenBank ENA	382641 tax ID
[Ref.: #66792]	Trichococcus patagoniensis strain DSM 18806	382641.5	wgs	PATRIC	382641 tax ID	*
[Ref.: #66792]	Trichococcus patagoniensis DSM 18806	2737471637	draft	JGI IMG/M	382641 tax ID	*

[Ref.: #7708]	GC-content	45.82 mol%
[Ref.: #67770]	GC-content	45.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Trichococcus patagoniensis DSM 18806 NCBI: GCA_003051085.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	70	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Trichococcus patagoniensis strain DSM 18806 PATRIC: 382641.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	82.014	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	60.62	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	71.603	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.577	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.627	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	82.954	no

Availability in culture collections External links

[Ref.: #7708]

Culture collection no.

DSM 18806, ATCC BAA-756, CIP 108035, JCM 12176

[Ref.: #71842]

SI-ID 201778

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Trichococcus patagoniensis sp. nov., a facultative anaerobe that grows at -5 degrees C, isolated from penguin guano in Chilean Patagonia.	Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Krader PE, Tang J	Int J Syst Evol Microbiol	10.1099/ijs.0.64225-0	2006	*

References

#7708

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18806

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33873 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71842

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID201778.1 )

#121629 Collection of Institut Pasteur ; Curators of the CIP; CIP 108035
* These data were automatically processed and therefore are not curated

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Trichococcus patagoniensis DSM 18806

Trichococcus patagoniensis strain DSM 18806

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