Name: Granulicatella elegans B1333
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2275

Type strain:

Species: Granulicatella elegans

Strain Designation: B1333, B-1333

Culture col. no.: DSM 11693, CCUG 38949, CCM 4945, CIP 105513

Strain history: CIP <- 1998, A. Roggenkamp, Ludwig Maximilians Univ., Munich, Germany: strain B-1333 <- Max von Pettenkofer Inst., Munich Univ., Munich, Germany <- Dritter Orden Hosp.

NCBI tax ID(s): 626369 (strain), 137732 (species)

SI-ID 14092

LMG 19514, DSM 11693, ATCC 700633, CCUG 38949, CIP 105513, CCM 4945

Special Collections

Other strains from Granulicatella elegans

Section

Granulicatella elegans B1333 is an anaerobe, Gram-positive bacterium that was isolated from blood culture from a patient with acute endocarditis.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Granulicatella*
	Species	**Granulicatella elegans**
	Full Scientific Name (LPSN)	Granulicatella elegans (Roggenkamp et al. 1999) Collins and Lawson 2000

Synonym

Abiotrophia elegans

Information on morphological and physiological properties Morphology

[Ref.: #119003]	Gram stain	positive

[Ref.: #119003]	Cell shape	oval-shaped

[Ref.: #119003]	Motility	no

[Ref.: #54575]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4445]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #4445]

Culture medium growth

[Ref.: #4445]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #38559]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #38559]

Culture medium growth

[Ref.: #38559]

Culture medium composition

expand / minimize

[Ref.: #119003]

Culture medium

CIP Medium 10

[Ref.: #119003]

Culture medium growth

[Ref.: #119003]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4445]		growth	37 °C
[Ref.: #38559]		growth	37 °C
[Ref.: #119003]		growth	30-37 °C
[Ref.: #119003]	no	growth	10 °C
[Ref.: #119003]	no	growth	41 °C
[Ref.: #119003]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4445]	Oxygen tolerance	anaerobe
[Ref.: #54575]	Oxygen tolerance	microaerophile
[Ref.: #119003]	Oxygen tolerance	facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #119003]		NaCl	no	growth	6.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #119003]	esculin ChEBI	-	hydrolysis
[Ref.: #119003]	hippurate ChEBI	+	hydrolysis
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #119003]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #119003]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #119003]		acetoin ChEBI	-
[Ref.: #68380]		indole ChEBI		-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API rID32A
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #119003]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32A
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #119003]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119003]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119003]	oxidase	-
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #4445]	13364	-	+	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	+	+	+	+	-	+
[Ref.: #4445]	12591	-	+	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	+	+	-	+/-	+/-	-	+	+/-	+/-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119003]	8761	-	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4445]	Sample type/isolated from	blood culture from a patient with acute endocarditis
[Ref.: #4445]	Geographic location (country and/or sea, region)	Munich; Krankenhaus Dritter Orden
[Ref.: #4445]	Country	Germany
[Ref.: #4445]	Country ISO 3 Code	DEU
[Ref.: #4445]	Continent	Europe
[Ref.: #4445]	Geographic location	48.1656°/11.5047°

[Ref.: #119003]	Sample type/isolated from	Human, Blood
[Ref.: #119003]	Geographic location (country and/or sea, region)	München
[Ref.: #119003]	Country	Germany
[Ref.: #119003]	Country ISO 3 Code	DEU
[Ref.: #119003]	Continent	Europe
[Ref.: #119003]	Isolation date	1997

[Ref.: #54575]	Geographic location (country and/or sea, region)	München
[Ref.: #54575]	Country	Germany
[Ref.: #54575]	Country ISO 3 Code	DEU
[Ref.: #54575]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Infection	#Patient	-
#Infection	#Patient	#Blood culture
#Host Body-Site	#Organ	#Heart

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF016390 (>99% sequence identity) for Granulicatella elegans subclade from Microbeatlas

Aquatic Samples	1667
Soil Samples	1318
Animal Samples	59773
Plant Samples	514
Total Samples	63272

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4445]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119003]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4445]	Abiotrophia elegans 16S ribosomal RNA gene, complete sequence	AF016390	1538	GenBank ENA	626369 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Granulicatella elegans strain FDAARGOS_1559	137732.26	complete	PATRIC	137732 tax ID	*
[Ref.: #66792]	Granulicatella elegans strain FDAARGOS_1559	137732.27	complete	PATRIC	137732 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Granulicatella elegans strain FDAARGOS_1559 PATRIC: 137732.26
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.274	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	79.082	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.254	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.393	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.811	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.979	no

Availability in culture collections External links

[Ref.: #4445]

Culture collection no.

DSM 11693, CCUG 38949, CCM 4945, CIP 105513

[Ref.: #71833]

SI-ID 14092

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Cytokine induction of peripheral blood mononuclear cells by biofilms and biofilm supernatants of Granulicatella and Abiotrophia spp.	Bhardwaj RG, Al-Khabbaz A, Karched M	Microb Pathog	10.1016/j.micpath.2017.11.037	2017	*
Pathogenicity	Granulicatella and Abiotrophia species from human clinical specimens.	Christensen JJ, Facklam RR	J Clin Microbiol	10.1128/JCM.39.10.3520-3523.2001	2001	*

References

#4445

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11693

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38559 ; Curators of the CIP;
#54575 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38949

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71833

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14092.1 )

#119003 Collection of Institut Pasteur ; Curators of the CIP; CIP 105513
* These data were automatically processed and therefore are not curated

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Granulicatella elegans strain FDAARGOS_1559

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