Carnobacterium alterfunditum (DSM 5972, ACAM 313, ATCC 49837)

Name: Carnobacterium alterfunditum (DSM 5972, ACAM 313, ATCC 49837)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2266

Type strain

Strain Designation pf4

Culture col. no. DSM 5972 ACAM 313 ATCC 49837 CCUG 34643 IFO 15548 2 more

NCBI tax ID(s) 1449335 28230

Special Collections DSMZ CCUG CIP

History DSMZ <- P.D. Franzmann, pf4 CIP <- 1998, ATCC <- N. Weiss <- P. Franzmann: strain Pf4

Links

Carnobacterium alterfunditum pf4 is an aerobe, Gram-positive, motile bacterium that was isolated from water.

Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 8234

LMG 14462,ATCC 49837,CCUG 34643,DSM 5972,IFO 15548,LMG 13520,NCFB 3003,NCIMB 13248,CIP 105796,DSM 5973,CECT 5892,NBRC 15548,JCM 12498

@ref 20215

Last LPSN update 2026-05-29 08:25:26

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Carnobacteriaceae

Genus Carnobacterium

Species Carnobacterium alterfunditum

Full scientific name Carnobacterium alterfunditum Franzmann et al. 1993

BacDive ID	Other strains from **Carnobacterium alterfunditum** (1)	Type strain
2267	C. alterfunditum pf1, DSM 5973

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116268	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2399	TSBY SALT MEDIUM (DSMZ Medium 466)	Medium recipe at MediaDive	Name: TSBY SALT MEDIUM (DSMZ Medium 466) Composition: Trypticase soy broth 30.0 g/l NaCl 13.0 g/l MgCl2 x 6 H2O 4.0 g/l MgSO4 x 7 H2O 3.45 g/l Yeast extract 3.0 g/l KCl 0.34 g/l NH4Cl 0.25 g/l CaCl2 x 2 H2O 0.14 g/l Distilled water
40197	MEDIUM 297 - for Carnobacterium alberfunditum		Distilled water make up to (1000.000 ml);Sodium chloride (13.000 g);Potassium chloride (0.340 g);Magnesium chloride hexahydrate (4.000 g);Magnesium sulphate heptahydrate (3.450 g);Calcium chloride dihydrate (0.140 g);Agar (15.000 g);Yeast extract (3.000g)
116268	CIP Medium 297	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2399	positive	growth	20
40197	positive	growth	20
52228	positive	growth	16-22
116268	positive	growth	5-30
116268	negative	growth	37
116268	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
52228	aerobe
116268	facultative anaerobe
125439	obligate aerobe	95.171

Halophily

@ref	Salt	Tested relation	Concentration
116268	NaCl	growth	0 %
116268	NaCl	growth	2 %
116268	NaCl	growth	4 %
116268	NaCl	growth	6 %
116268	NaCl	growth	8 %
116268	NaCl	growth	10 %

Murein

@ref	Murein short key	Type
2399	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
116268	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
116268	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
116268	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
116268	17632 ChEBI	nitrate	-	builds gas from
116268	17632 ChEBI	nitrate	-	reduction
116268	16301 ChEBI	nitrite	-	builds gas from
116268	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116268	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
116268	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116268	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
116268	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116268	caseinase	-	3.4.21.50
116268	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
116268	gamma-glutamyltransferase	-	2.3.2.2
116268	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116268	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
116268	ornithine decarboxylase	-	4.1.1.17
116268	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116268	tryptophan deaminase	-
116268	tween esterase	-
116268	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116268	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116268	not determinedn.d.	-	-	-	-	+/-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+/-	+	+	+	+/-	+	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2399	water	Vestfold Hills, Ace Lake, depth 24 m			Australia and Oceania
52228	Water	Vestfold Hills,Ace Lake	Antarctica	ATA	Australia and Oceania
116268	Environment, Ace lake	Vestfold hills	Antarctica	ATA	Antarctica

Taxonmaps

69479

Global distribution of 16S sequence AB680898 (>99% sequence identity) for Carnobacterium from Microbeatlas

Aquatic Samples	370
Soil Samples	303
Animal Samples	580
Plant Samples	32
Total Samples	1285

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2399	1	Risk group (German classification) According to TRBA 466
116268	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM74411v1 assembly for Carnobacterium alterfunditum DSM 5972 pf4	contig	GCA_000744115	1449335.3	2574179752	1449335	76.73

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Carnobacterium alterfunditum large 16S-23S rRNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence	AY170834	448	28230
20218	Carnobacterium alterfunditum medium 16S-23S rRNA intergenic spacer and tRNA-Ala gene, complete sequence	AY170835	337	28230
20218	Carnobacterium alterfunditum small 16S-23S rRNA intergenic spacer, complete sequence	AY170836	225	28230
20218	Carnobacterium alterfunditum gene for 16S rRNA, partial sequence, strain: NBRC 15548	AB680898	1484	28230

GC content

@ref	GC-content (mol%)	Method
2399	33.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM74411v1 assembly for Carnobacterium alterfunditum DSM 5972 pf4
BV-BRC: 1449335.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.17	no
125439	gram_stain	BacteriaNetⓘ	variable	53.39	no
125439	motility	BacteriaNetⓘ	yes	73.25	no
125439	spore_formation	BacteriaNetⓘ	yes	78.18	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Carnobacterium alterfunditum DSM 5972 strain pf4
PATRIC: 1449335.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.84	no
125438	anaerobic	anaerobicⓘ	no	89.08	yes
125438	spore-forming	spore-formingⓘ	no	68.49	no
125438	aerobic	aerobicⓘ	no	89.74	no
125438	thermophilic	thermophileⓘ	no	92.83	yes
125438	flagellated	motile2+ⓘ	yes	61.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrotrophic, lactic acid-producing bacteria from anoxic waters in Ace Lake, Antarctica; Carnobacterium funditum sp. nov. and Carnobacterium alterfunditum sp. nov.	Franzmann PD, Hopfl P, Weiss N, Tindall BJ	Arch Microbiol	10.1007/BF00262994	1991

References

#2399	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5972
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40197	; Curators of the CIP;
#52228	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34643
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116268	Collection of Institut Pasteur ; Curators of the CIP; CIP 105796
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Carnobacterium alterfunditum (DSM 5972, ACAM 313, ATCC 49837)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Murein

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000744115

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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