Alloiococcus otitis | Type strain | DSM 7252, ATCC 51267, NCFB 2890

Strain identifier

BacDive ID: 2249

Type strain:

Species: Alloiococcus otitis

Culture col. no.: DSM 7252, ATCC 51267, NCFB 2890

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	31-03-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Lactobacillales
	Family	Carnobacteriaceae
	Genus	Alloiococcus
	Species	Alloiococcus otitis
	Full Scientific Name (PNU)	Alloiococcus otitis Aguirre and Collins 1992

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #23072]	Gram stain	positive
[Ref.: #23072]	Cell shape	ovoid-shaped

[Ref.: #23072]	Type of hemolysis	alpha
[Ref.: #23072]	Incubation period	2 days
[Ref.: #23072]	Cultivation medium used	blood agar

	Enzyme	Enzyme activity	EC number
[Ref.: #23072]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23072]	beta-galactosidase	+	3.2.1.23
[Ref.: #23072]	catalase	+	1.11.1.6
[Ref.: #23072]	cytochrome oxidase	-	1.9.3.1
[Ref.: #23072]	leucine arylamidase	+	3.4.11.1
[Ref.: #23072]	pyrrolidonyl arylamidase	+	3.4.19.3

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23072]		NaCl		growth	6.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23072]	Arabinose ChEBI	-	builds acid from
[Ref.: #23072]	Esculin ChEBI	-	hydrolysis
[Ref.: #23072]	Galactitol ChEBI	-	builds acid from
[Ref.: #23072]	Glucose ChEBI	-	builds acid from
[Ref.: #23072]	Glycerol ChEBI	-	builds acid from
[Ref.: #23072]	Hippuric acid ChEBI	+/-	hydrolysis
[Ref.: #23072]	Inulin ChEBI	-	builds acid from
[Ref.: #23072]	Lactose ChEBI	-	builds acid from
[Ref.: #23072]	Maltose ChEBI	-	builds acid from
[Ref.: #23072]	Mannitol ChEBI	-	builds acid from
[Ref.: #23072]	Mannose ChEBI	-	builds acid from
[Ref.: #23072]	Raffinose ChEBI	-	builds acid from
[Ref.: #23072]	Rhamnose ChEBI	-	builds acid from
[Ref.: #23072]	Ribose ChEBI	-	builds acid from
[Ref.: #23072]	Salicin ChEBI	-	builds acid from
[Ref.: #23072]	Sorbitol ChEBI	-	builds acid from
[Ref.: #23072]	Starch ChEBI	-	hydrolysis
[Ref.: #23072]	Sucrose ChEBI	-	builds acid from
[Ref.: #23072]	Trehalose ChEBI	-	builds acid from
[Ref.: #23072]	Xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #23072]

Oxygen tolerance

aerobe

[Ref.: #23072]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #3074]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693), 37°C

[Ref.: #3074]

Culture medium growth

[Ref.: #3074]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #23072]

Culture medium

blood agar

[Ref.: #23072]

Culture medium growth

[Ref.: #23072]

Culture medium

blood agar plates

[Ref.: #23072]

Culture medium growth

[Ref.: #23072]

Culture medium

Todd-Hewitt broth (Oxoid Ltd., Basingstoke, United Kingdom)

[Ref.: #23072]

Culture medium growth

[Ref.: #23072]

Culture medium composition

expand / minimize

[Ref.: #40680]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #40680]

Culture medium growth

[Ref.: #40680]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #3074]		growth	37 ̊C
[Ref.: #23072]	no	growth	45.0 ̊C
[Ref.: #40680]		growth	37 ̊C

[Ref.: #3074]	Temperature range	mesophilic
[Ref.: #23072]	Temperature range	thermophilic
[Ref.: #40680]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #3074]

Sample type/isolated from

Human middle ear fluid,persistent otitis media

Isolation sources categories

#Infection	#Disease	-
#Host	#Human	-
#Host Body-Site	#Organ	#Ear
#Host Body Product	#Fluids	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #3074]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #3074]	GC-content	44.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #23072]	GC-content	44.0-45.0 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.1, whole genome shotgun sequence	AGXA01000001 ENA	WGS	66696	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.2, whole genome shotgun sequence	AGXA01000002 ENA	WGS	83602	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.3, whole genome shotgun sequence	AGXA01000003 ENA	WGS	14078	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.4, whole genome shotgun sequence	AGXA01000004 ENA	WGS	212523	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.5, whole genome shotgun sequence	AGXA01000005 ENA	WGS	96428	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.6, whole genome shotgun sequence	AGXA01000006 ENA	WGS	3333	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.7, whole genome shotgun sequence	AGXA01000007 ENA	WGS	75569	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.8, whole genome shotgun sequence	AGXA01000008 ENA	WGS	2769	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.9, whole genome shotgun sequence	AGXA01000009 ENA	WGS	567	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.10, whole genome shotgun sequence	AGXA01000010 ENA	WGS	11022	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.11, whole genome shotgun sequence	AGXA01000011 ENA	WGS	26222	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.12, whole genome shotgun sequence	AGXA01000012 ENA	WGS	6538	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.13, whole genome shotgun sequence	AGXA01000013 ENA	WGS	72886	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.14, whole genome shotgun sequence	AGXA01000014 ENA	WGS	67864	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.15, whole genome shotgun sequence	AGXA01000015 ENA	WGS	4300	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.16, whole genome shotgun sequence	AGXA01000016 ENA	WGS	106654	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.17, whole genome shotgun sequence	AGXA01000017 ENA	WGS	84992	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.18, whole genome shotgun sequence	AGXA01000018 ENA	WGS	95891	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.19, whole genome shotgun sequence	AGXA01000019 ENA	WGS	16898	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.20, whole genome shotgun sequence	AGXA01000020 ENA	WGS	103661	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.21, whole genome shotgun sequence	AGXA01000021 ENA	WGS	124918	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.22, whole genome shotgun sequence	AGXA01000022 ENA	WGS	141792	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.23, whole genome shotgun sequence	AGXA01000023 ENA	WGS	11342	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.24, whole genome shotgun sequence	AGXA01000024 ENA	WGS	30313	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.25, whole genome shotgun sequence	AGXA01000025 ENA	WGS	38961	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.26, whole genome shotgun sequence	AGXA01000026 ENA	WGS	12036	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.27, whole genome shotgun sequence	AGXA01000027 ENA	WGS	61417	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.28, whole genome shotgun sequence	AGXA01000028 ENA	WGS	2873	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.29, whole genome shotgun sequence	AGXA01000029 ENA	WGS	59970	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.30, whole genome shotgun sequence	AGXA01000030 ENA	WGS	8879	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.31, whole genome shotgun sequence	AGXA01000031 ENA	WGS	67860	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.32, whole genome shotgun sequence	AGXA01000032 ENA	WGS	10398	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.33, whole genome shotgun sequence	AGXA01000033 ENA	WGS	34702	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.34, whole genome shotgun sequence	AGXA01000034 ENA	WGS	15535	883081 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Alloiococcus otitis ATCC 51267 cont1.35, whole genome shotgun sequence	AGXA01000035 ENA	WGS	10567	883081 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Alloiococcus otitis gene for 16S rRNA, partial sequence, strain: NBRC 15545	AB680896 ENA	16S	1474	1652 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	A.otitis 16S rRNA	X59765 ENA	16S	1525	1652 tax ID	*

Availability in culture collectionsStrain availability

[Ref.: #3074]

Culture collection no.

DSM 7252, ATCC 51267, NCFB 2890

[Ref.: #3074]

Strain history

<- NCFB; NCFB 2890

[Ref.: #20218]

Associated Passport(s) in StrainInfo

692086, 41625, 41628

References

#3074

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7252

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23072

M. Aguirre,M. D. Collins: Phylogenetic Analysis of Alloiococcus otitis gen. nov., sp. nov., an Organism from Human Middle Ear Fluid. IJSEM 42: 79 - 83 1992 ( DOI 10.1099/00207713-42-1-79 )

#40680 ; Curators of the CIP;
* These References are textmined

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