Name: Sulfurospirillum cavolei Phe91
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2232

Type strain:

Species: Sulfurospirillum cavolei

Strain Designation: Phe91

Culture col. no.: DSM 18149, JCM 13918, NBRC 109482

Strain history: Y. Kodama Phe91.

NCBI tax ID(s): 1349788 (strain), 366522 (species)

SI-ID 302775

DSM 18149, JCM 13918

Special Collections

Section

When using BacDive for research please cite our paper

Sulfurospirillum cavolei Phe91 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from petroleum-contaminated groundwater in an underground crude oil storage cavity.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Campylobacteraceae*
	Genus	*Sulfurospirillum*
	Species	**Sulfurospirillum cavolei**
	Full Scientific Name (LPSN)	Sulfurospirillum cavolei Kodama et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32021]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.738
[Ref.: #125439]	Gram stain	negative Confidence in %95.2

[Ref.: #32021]	Cell length	3.25 µm

[Ref.: #32021]	Cell width	0.45 µm

[Ref.: #32021]	Cell shape	rod-shaped

[Ref.: #32021]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7408]

Culture medium

SULFUROSPIRILLUM MEDIUM (DSMZ Medium 541)

[Ref.: #7408]

Culture medium growth

[Ref.: #7408]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7408]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7408]	growth	30 °C
[Ref.: #32021]	growth	20-40 °C
[Ref.: #32021]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32021]			optimum	7
[Ref.: #32021]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7408]	Oxygen tolerance	anaerobe
[Ref.: #32021]	Oxygen tolerance	facultative anaerobe

[Ref.: #125438]	Ability of spore formation	no Confidence in %90.396
[Ref.: #125439]	Ability of spore formation	no Confidence in %97.3

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32021]		NaCl		growth	<1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32021]	lactate ChEBI	+	carbon source
[Ref.: #32021]	malate ChEBI	+	carbon source
[Ref.: #32021]	nitrate ChEBI	+	reduction
[Ref.: #32021]	pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7408]	Sample type/isolated from	petroleum-contaminated groundwater in an underground crude oil storage cavity
[Ref.: #7408]	Geographic location (country and/or sea, region)	Kuji city in Iwate
[Ref.: #7408]	Country	Japan
[Ref.: #7408]	Country ISO 3 Code	JPN
[Ref.: #7408]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Petroleum-contaminated groundwater in an underground crude oil storage cavity at Kuji
[Ref.: #67770]	Geographic location (country and/or sea, region)	Iwate
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Aquatic	#Groundwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB246781 (>99% sequence identity) for Sulfurospirillum cavolei subclade from Microbeatlas

Aquatic Samples	3057
Soil Samples	236
Animal Samples	567
Plant Samples	148
Total Samples	4008

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7408]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7408]	Sulfurospirillum cavolei gene for 16S rRNA, partial sequence	AB246781	1336	GenBank ENA	366522 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfurospirillum cavolei NBRC 109482	GCA_000813325	contig	GenBank ENA	1349788 tax ID	*
[Ref.: #66792]	Sulfurospirillum cavolei NBRC 109482	1349788.5	wgs	PATRIC	1349788 tax ID	*
[Ref.: #66792]	Sulfurospirillum cavolei NBRC 109482	2645727932	draft	JGI IMG/M	1349788 tax ID	*

[Ref.: #7408]	GC-content	42.7 mol%
[Ref.: #67770]	GC-content	42.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sulfurospirillum cavolei NBRC 109482 PATRIC: 1349788.5
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.738	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	64.66	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.396	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	76.558	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	88.502	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	71.167	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sulfurospirillum cavolei NBRC 109482 NCBI: GCA_000813325
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	63.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	95.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	74.6

Availability in culture collections External links

[Ref.: #7408]

Culture collection no.

DSM 18149, JCM 13918, NBRC 109482

[Ref.: #71794]

SI-ID 302775

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurospirillum cavolei sp. nov., a facultatively anaerobic sulfur-reducing bacterium isolated from an underground crude oil storage cavity.	Kodama Y, Ha LT, Watanabe K	Int J Syst Evol Microbiol	10.1099/ijs.0.64823-0	2007	*

References

#7408

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18149

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32021

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28273 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71794

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID302775.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28273

IJSEM 827 2007 ( DOI 10.1099/ijs.0.64823-0 , PubMed 17392214 )

* These data were automatically processed and therefore are not curated

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Sulfurospirillum cavolei NBRC 109482

Sulfurospirillum cavolei NBRC 109482

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