Name: Sulfurospirillum barnesii SES-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2226

Type strain:

Species: Sulfurospirillum barnesii

Strain Designation: SES-3

Culture col. no.: DSM 10660, ATCC 700032

Strain history: <- E. Falsen <- J. S. Blum, SES-3 (Geospirillum barnesii)

NCBI tax ID(s): 44674 (species)

SI-ID 46208

ATCC 700032, DSM 10660

Section

Sulfurospirillum barnesii SES-3 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater marsh.

Gram-negative
motile
vibrio-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Campylobacteraceae*
	Genus	*Sulfurospirillum*
	Species	**Sulfurospirillum barnesii**
	Full Scientific Name (LPSN)	Sulfurospirillum barnesii Stolz et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #23071]	Gram stain	negative

[Ref.: #23071]	Cell length	1.0-2.0 mm

[Ref.: #23071]	Cell width	0.3 µm

[Ref.: #23071]	Cell shape	vibrio-shaped
[Ref.: #23071]	Cell shape	spiral-shaped

[Ref.: #23071]	Motility	yes

[Ref.: #23071]	Flagellum arrangement	polar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4027]

Culture medium

SULFUROSPIRILLUM BARNESII MEDIUM (DSMZ Medium 771)

[Ref.: #4027]

Culture medium growth

[Ref.: #4027]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4027]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #4027]		growth	30 °C
[Ref.: #23071]		growth	25.0 °C
[Ref.: #23071]		growth	30.0 °C
[Ref.: #23071]	no	growth	42.0 °C
[Ref.: #23071]		optimum	33.0 °C

[Ref.: #4027]	Temperature range	mesophilic
[Ref.: #23071]	Temperature range	mesophilic
[Ref.: #23071]	Temperature range	thermophilic
[Ref.: #23071]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23071]			optimum	7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4027]

Oxygen tolerance

anaerobe

[Ref.: #4027]

Name of produced compound

reductase

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23071]		NaCl		optimum	0.05	%
[Ref.: #23071]		NaCl		growth	0.8	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23071]	arsenate ChEBI	+	electron acceptor
[Ref.: #23071]	aspartate ChEBI	+	electron acceptor
[Ref.: #23071]	dimethyl sulfoxide ChEBI	-	electron acceptor
[Ref.: #23071]	elemental sulfur ChEBI	+	electron acceptor
[Ref.: #23071]	ferric iron ChEBI	+	electron acceptor
[Ref.: #23071]	formate ChEBI	+	electron donor
[Ref.: #23071]	fumarate ChEBI	+	electron acceptor
[Ref.: #23071]	fumarate ChEBI	+	electron donor
[Ref.: #23071]	fumarate ChEBI	+	fermentation
[Ref.: #23071]	lactate ChEBI	+	electron donor
[Ref.: #23071]	manganese dioxide	+	electron acceptor
[Ref.: #23071]	nitrate ChEBI	+	electron acceptor
[Ref.: #23071]	nitrate ChEBI	+	reduction
[Ref.: #23071]	nitrite ChEBI	+	electron acceptor
[Ref.: #23071]	pyruvate ChEBI	+	electron donor
[Ref.: #23071]	selenate ChEBI	+	electron acceptor
[Ref.: #23071]	selenate ChEBI	+	reduction
[Ref.: #23071]	sulfite ChEBI	-	electron acceptor
[Ref.: #23071]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #23071]	trimethylamine n-oxide ChEBI	+	electron acceptor
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4027]	Sample type/isolated from	freshwater marsh
[Ref.: #4027]	Geographic location (country and/or sea, region)	Nevada, Massie Slough
[Ref.: #4027]	Country	USA
[Ref.: #4027]	Country ISO 3 Code	USA
[Ref.: #4027]	Continent	North America

[Ref.: #23071]	Sample type/isolated from	selenium-contaminated freshwater marsh
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Engineered	#Contamination	-
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4027]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4027]	Sulfurospirillum barnesii 16S ribosomal RNA gene, partial sequence	AF038843	1471	ENA	760154 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfurospirillum barnesii SES-3	GCA_000265295	complete	GenBank	760154 tax ID	*
[Ref.: #66792]	Sulfurospirillum barnesii SES-3	760154.4	complete	PATRIC	760154 tax ID	*
[Ref.: #66792]	Sulfurospirillum barnesii SES-3	2506783064	complete	JGI IMG/M	760154 tax ID	*

[Ref.: #4027]	GC-content	40.9 mol%
[Ref.: #23071]	GC-content	40.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfurospirillum barnesii SES-3 SES-3 NCBI: GCA_000265295.1
[Ref.: #69480]	motile	yes	89.227	yes
[Ref.: #69480]	flagellated	yes	77.753	no
[Ref.: #69480]	gram-positive	no	98.58	yes
[Ref.: #69480]	anaerobic	yes	97.402	yes
[Ref.: #69480]	aerobic	no	98.003	yes
[Ref.: #69480]	halophile	no	89.845	yes
[Ref.: #69480]	spore-forming	no	92.668	no
[Ref.: #69480]	thermophile	no	99.225	no
[Ref.: #69480]	glucose-util	no	83.12	no
[Ref.: #69480]	glucose-ferment	no	85.802	no

Availability in culture collections External links

[Ref.: #4027]

Culture collection no.

DSM 10660, ATCC 700032

[Ref.: #71789]

SI-ID 46208

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Contrasting effects of dissimilatory iron (III) and arsenic (V) reduction on arsenic retention and transport.	Kocar BD, Herbel MJ, Tufano KJ, Fendorf S	Environ Sci Technol	10.1021/es061540k	2006	*
Phylogeny	Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the epsilon Proteobacteria.	Stolz JF, Ellis DJ, Blum JS, Ahmann D, Lovley DR, Oremland RS	Int J Syst Bacteriol	10.1099/00207713-49-3-1177	1999	*

References

#4027

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10660

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23071

John F. Stolz,Debra J. Ellis,Jodi Switzer Blum,Dianne Ahmann,Derek R. Lovley,Ronald S. Oremland: Note: Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the e-Proteobacteria. IJSEM 49: 1177 - 1180 1999 ( DOI 10.1099/00207713-49-3-1177 , PubMed 10425777 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71789

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46208.1 )

* These data were automatically processed and therefore are not curated

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Sulfurospirillum barnesii SES-3 SES-3

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