Sulfurospirillum barnesii (DSM 10660, ATCC 700032, SES-3)

Name: Sulfurospirillum barnesii (DSM 10660, ATCC 700032, SES-3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2226

Type strain

Strain Designation SES-3

Culture col. no. DSM 10660 ATCC 700032 SES-3

NCBI tax ID(s) 44674

Special Collections DSMZ Literature strains

History DSMZ <- E. Falsen <- J. S. Blum, SES-3 (Geospirillum barnesii)

Links

Sulfurospirillum barnesii SES-3 is an anaerobe, Gram-negative, motile bacterium that was isolated from freshwater marsh.

Gram-negative motile vibrio-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 46208

ATCC 700032,DSM 10660

@ref 20215

Last LPSN update 2026-05-29 08:25:25

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Sulfurospirillum

Species Sulfurospirillum barnesii

Full scientific name Sulfurospirillum barnesii Stolz et al. 1999

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
23071	negative	1.0-2.0 mm	0.3 µm	vibrio-shaped	polar
23071				spiral-shaped
125438	negative					98.366
125439	negative					97.281

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4027	SULFUROSPIRILLUM BARNESII MEDIUM (DSMZ Medium 771)		Medium recipe at MediaDive	Name: SULFUROSPIRILLUM BARNESII MEDIUM (DSMZ Medium 771) Composition: Na-DL-lactate 2.24327 g/l NaNO3 1.69492 g/l Na2CO3 1.49551 g/l Yeast extract 0.997009 g/l NaCl 0.458624 g/l (NH4)2SO4 0.224327 g/l KH2PO4 0.224327 g/l K2HPO4 0.224327 g/l MgSO4 x 7 H2O 0.11665 g/l Na2S x 9 H2O 0.0997009 g/l L-Cysteine HCl x H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4027	positive	growth	30
23071	positive	growth	25.0
23071	positive	growth	30.0
23071	negative	growth	42.0
23071	positive	optimum	33.0

Culture pH

@ref	Ability	Type	PH
23071	positive	optimum	7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4027	anaerobe
125439	obligate aerobe	95.662

Spore formation

@ref	Spore formation	Confidence
125439		99.893

Compound production

4027

Compoundreductase

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23071	NaCl		optimum	0.05 %
23071	NaCl	positive	growth	0.8 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23071	29125 ChEBI	arsenate	+	electron acceptor
23071	35391 ChEBI	aspartate	+	electron acceptor
23071	28262 ChEBI	dimethyl sulfoxide	-	electron acceptor
23071	33403 ChEBI	elemental sulfur	+	electron acceptor
23071	29034 ChEBI	ferric iron	+	electron acceptor
23071	15740 ChEBI	formate	+	electron donor
23071	29806 ChEBI	fumarate	+	electron acceptor
23071	29806 ChEBI	fumarate	+	electron donor
23071	29806 ChEBI	fumarate	+	fermentation
23071	24996 ChEBI	lactate	+	electron donor
23071		manganese dioxide	+	electron acceptor
23071	17632 ChEBI	nitrate	+	electron acceptor
23071	17632 ChEBI	nitrate	+	reduction
23071	16301 ChEBI	nitrite	+	electron acceptor
23071	15361 ChEBI	pyruvate	+	electron donor
23071	15075 ChEBI	selenate	+	electron acceptor
23071	15075 ChEBI	selenate	+	reduction
23071	17359 ChEBI	sulfite	-	electron acceptor
23071	16094 ChEBI	thiosulfate	+	electron acceptor
23071	15724 ChEBI	trimethylamine n-oxide	+	electron acceptor

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Wetland (Swamp)
#Engineered	#Contamination	-
#Environmental	#Aquatic	#Freshwater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4027	freshwater marsh	Nevada, Massie Slough	USA	USA	North America
23071	selenium-contaminated freshwater marsh

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4027	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM26529v1 assembly for Sulfurospirillum barnesii SES-3	complete	GCA_000265295	760154.4	2506783064	760154	99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4027	Sulfurospirillum barnesii 16S ribosomal RNA gene, partial sequence	AF038843	1471		760154

GC content

@ref	GC-content (mol%)	Method
4027	40.9
23071	40.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM26529v1 assembly for Sulfurospirillum barnesii SES-3
BV-BRC: 760154.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.66	no
125439	gram_stain	BacteriaNetⓘ	negative	97.28	no
125439	motility	BacteriaNetⓘ	yes	41.08	no
125439	spore_formation	BacteriaNetⓘ	no	99.89	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sulfurospirillum barnesii SES-3 SES-3
NCBI: GCA_000265295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.37	yes
125438	anaerobic	anaerobicⓘ	yes	74.85	yes
125438	aerobic	aerobicⓘ	no	89.85	yes
125438	spore-forming	spore-formingⓘ	no	87.90	no
125438	thermophilic	thermophileⓘ	no	88.28	yes
125438	flagellated	motile2+ⓘ	yes	75.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Hydrogen production by Sulfurospirillum species enables syntrophic interactions of Epsilonproteobacteria.	Kruse S, Goris T, Westermann M, Adrian L, Diekert G.	Nat Commun	10.1038/s41467-018-07342-3	2018
Enzymology	Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization.	Lin X, Wakeham SG, Putnam IF, Astor YM, Scranton MI, Chistoserdov AY, Taylor GT.	Appl Environ Microbiol	10.1128/aem.72.4.2679-2690.2006	2006
Metabolism	Contrasting effects of dissimilatory iron (III) and arsenic (V) reduction on arsenic retention and transport.	Kocar BD, Herbel MJ, Tufano KJ, Fendorf S	Environ Sci Technol	10.1021/es061540k	2006
Phylogeny	Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the epsilon Proteobacteria.	Stolz JF, Ellis DJ, Blum JS, Ahmann D, Lovley DR, Oremland RS	Int J Syst Bacteriol	10.1099/00207713-49-3-1177	1999

References

#4027	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10660
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23071	John F. Stolz,Debra J. Ellis,Jodi Switzer Blum,Dianne Ahmann,Derek R. Lovley,Ronald S. Oremland: Note: Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the e-Proteobacteria. IJSEM 49: 1177 - 1180 1999 ( DOI 10.1099/00207713-49-3-1177 , PubMed 10425777 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sulfurospirillum barnesii (DSM 10660, ATCC 700032, SES-3)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000265295

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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