Aerococcus urinaeequi (CCUG 28094, CIP 103442, NCIMB 701636)

Name: Aerococcus urinaeequi (CCUG 28094, CIP 103442, NCIMB 701636)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 222

Type strain

Strain Designation PUE

Culture col. no. CCUG 28094 CIP 103442 NCIMB 701636 DSM 20341 ATCC 29723 5 more

NCBI tax ID(s) 1120952 51665

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- NCDO <- Techn. Hoogeschool Delft <- R.H. Mees, PUE CIP 103442 <-- NCDO 1636 <-- Tech. Hogesch., Delft <-- R. H. Mees PUE.

Links

Aerococcus urinaeequi PUE is a facultative anaerobe, Gram-positive, sphere-shaped bacterium that was isolated from horse urine.

Gram-positive sphere-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 3825

LMG 11420,ATCC 29723,CCUG 28094,DSM 20341,LMG 13989,NCFB 1636,NCDO 1636,CIP 103442,NCIMB 701636,KCTC 3654,BCRC 12858,CCRC 12858,JCM 12519,VTT E-981001

@ref 20215

Last LPSN update 2026-02-09 11:17:49

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Aerococcaceae

Genus Aerococcus

Species Aerococcus urinaeequi

Full scientific name Aerococcus urinaeequi (Garvie 1988 ex Mees 1934) Felis et al. 2005

Synonyms (1)

Pediococcus urinaeequi

BacDive ID	Other strains from **Aerococcus urinaeequi** (7)	Type strain
147929	A. urinaeequi CCUG 34522
150693	A. urinaeequi CCUG 41975, IFO 12173, ATCC 29722, LMG 14194, ...
151116	A. urinaeequi CCUG 43316
151117	A. urinaeequi CCUG 43317
153005	A. urinaeequi CCUG 48252
162929	A. urinaeequi JCM 20447, IAM 12287, NISL 7137
162930	A. urinaeequi JCM 20448, IAM 12288, IFO 12217, NBRC 12217, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
22981	positive	sphere-shaped
125438			90.333
125438	positive		91.756

Colony morphology

49095

Incubation period1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8746	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8746	positive	growth	30
22981	positive	optimum	25.0-30.0
49095	positive	growth	37
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
22981	positive	minimum	6.5-7.0
22981	positive	optimum	8.5-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
22981	facultative anaerobe
49095	microaerophile
125439	obligate aerobe	97.4

Spore formation

22981

Spore formationno

Murein

@ref	Murein short key	Type
8746	A11	A1alpha L-Lys-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
22981	23652 ChEBI	dextrin	+	builds acid from
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
22981	17754 ChEBI	glycerol	-	builds acid from
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
22981	17306 ChEBI	maltose	+	builds acid from
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
22981	6731 ChEBI	melezitose	-	builds acid from
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
22981	30911 ChEBI	sorbitol	-	builds acid from
22981	28017 ChEBI	starch	-	builds acid from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
22981	17992 ChEBI	sucrose	+	builds acid from
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
22981	27082 ChEBI	trehalose	+	builds acid from
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Enzymes

@ref	Value	Activity	Ec
22981	catalase	-	1.11.1.6

Fatty acid profile

Metadata FA analysis

@ref

49095

Fatty acid	Percentage	ECL
C18:1 ω9c	28.4	17.769
C16:0	22.5	16
C18:0	6.8	18
C14:0	5.8	14
C18:2 ω6,9c/C18:0 ANTE	4.3	17.724
C16:1 ω7c/C15:0 ISO 2OH	2.3	15.85
Unidentified	1.4	13.863
Unidentified	1	13.775

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8746	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	-	+	+	+	+	+	+	+	-	+	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Equidae (Horse)
#Host Body Product	#Fluids	#Urine

Isolation

@ref	Sample type
8746	horse urine
49095	Horse urine
67770	Horse, urine

Taxonmaps

69479

Global distribution of 16S sequence LC153547 (>99% sequence identity) for Aerococcus from Microbeatlas

Aquatic Samples	13880
Soil Samples	8338
Animal Samples	90338
Plant Samples	4042
Total Samples	116598

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8746	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM154320v1 assembly for Aerococcus urinaeequi CCUG28094	complete	GCA_001543205	51665.4	2671180343	51665	92.88
67770	ASM42508v1 assembly for Aerococcus urinaeequi DSM 20341 = CCUG 28094	scaffold	GCA_000425085	1120952.3	2524614650	1120952	70.76

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pediococcus urinaeequi ATCC 29723 16S ribosomal RNA gene, partial sequence	AF429541	514	51665
20218	Pediococcus urinaeequi strain ATCC 29723 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF429628	539	51665
8746	Pediococcus urinaeequi DNA for 16S rRNA, partial sequence	D87677	1419	51665
67770	Aerococcus urinaeequi gene for 16S ribosomal RNA, partial sequence, strain: JCM 12519	LC153547	1372	51665
124043	Aerococcus urinaeequi strain CCUG 28094 16S ribosomal RNA gene, partial sequence.	MW111126	667	51665
124043	Aerococcus urinaeequi strain CCUG 28094 16S ribosomal RNA gene, partial sequence.	PQ524595	601	51665

GC content

@ref	GC-content (mol%)	Method
8746	39.5
8746	40.0	high performance liquid chromatography (HPLC)
67770	40	high performance liquid chromatography (HPLC)
67770	39.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aerococcus urinaeequi CCUG28094
NCBI: GCA_001543205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no
125439	gram_stain	BacteriaNetⓘ	variable	81.20	no
125439	motility	BacteriaNetⓘ	yes	70.40	no
125439	spore_formation	BacteriaNetⓘ	yes	77.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aerococcus urinaeequi CCUG28094
NCBI: GCA_001543205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.76	yes
125438	anaerobic	anaerobicⓘ	no	86.57	no
125438	aerobic	aerobicⓘ	no	89.93	no
125438	spore-forming	spore-formingⓘ	no	84.18	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	90.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Occurrence of disinfectant-resistant bacteria in a fresh-cut vegetables processing facility and their role in protecting Salmonella enteritidis.	Xu JG, Meng J, Bao WJ, Kang JM, Chen JY, Han BZ.	RSC Adv	10.1039/d0ra09325d	2021
Genetics	New Insight into Antimicrobial Compounds from Food and Marine-Sourced Carnobacterium Species through Phenotype and Genome Analyses.	Begrem S, Ivaniuk F, Gigout-Chevalier F, Kolypczuk L, Bonnetot S, Leroi F, Grovel O, Delbarre-Ladrat C, Passerini D.	Microorganisms	10.3390/microorganisms8071093	2020
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Genetics	Identification of an Aerococcus urinaeequi isolate by whole genome sequencing and average nucleotide identity analysis.	Zhou W, Gao S, Zheng J, Zhang Y, Zhou H, Zhang Z, Cao X, Shen H	J Glob Antimicrob Resist	10.1016/j.jgar.2022.04.013	2022
Genetics	Complete Genome Sequences of Aerococcus christensenii CCUG 28831T, Aerococcus sanguinicola CCUG 43001T, Aerococcus urinae CCUG 36881T, Aerococcus urinaeequi CCUG 28094T, Aerococcus urinaehominis CCUG 42038 BT, and Aerococcus viridans CCUG 4311T.	Carkaci D, Dargis R, Nielsen XC, Skovgaard O, Fuursted K, Christensen JJ	Genome Announc	10.1128/genomeA.00302-16	2016

References

#8746	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20341
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#22981	Giovanna E. Felis,Sandra Torriani,Franco Dellaglio: Reclassification of Pediococcus urinaeequi (ex Mees 1934) Garvie 1988 as Aerococcus urinaeequi comb. nov.. IJSEM 55: 1325 - 1327 2005 ( DOI 10.1099/ijs.0.63324-0 , PubMed 15879276 )
#49095	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28094
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aerococcus urinaeequi (CCUG 28094, CIP 103442, NCIMB 701636)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Metabolite utilization

Enzymes

Fatty acid profile

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001543205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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