Name: Aerococcus urinaeequi PUE
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 222

Type strain:

Species: Aerococcus urinaeequi

Strain Designation: PUE

Culture col. no.: CCUG 28094, CIP 103442, NCIMB 701636, DSM 20341, ATCC 29723, JCM 12519, NCDO 1636, LMG 11420, LMG 13989

Strain history: CIP 103442 <-- NCDO 1636 <-- Tech. Hogesch., Delft <-- R. H. Mees PUE.

NCBI tax ID(s): 1120952 (strain), 51665 (species)

SI-ID 3825

LMG 11420, ATCC 29723, CCUG 28094, DSM 20341, LMG 13989, NCFB 1636, NCDO 1636, CIP 103442, NCIMB 701636, KCTC 3654, BCRC 12858, CCRC 12858, JCM 12519, VTT E-981001

Other strains from Aerococcus urinaeequi

A. urinaeequi CCUG 34522
A. urinaeequi CCUG 41975, IFO 12173, ATCC 29722, ...
A. urinaeequi CCUG 43316
A. urinaeequi CCUG 43317
A. urinaeequi CCUG 48252
A. urinaeequi JCM 20447, IAM 12287, NISL 7137
A. urinaeequi JCM 20448, IAM 12288, IFO 12217, ...

Section

Aerococcus urinaeequi PUE is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from horse urine.

Gram-positive
sphere-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Aerococcaceae*
	Genus	*Aerococcus*
	Species	**Aerococcus urinaeequi**
	Full Scientific Name (LPSN)	Aerococcus urinaeequi (Garvie 1988 ex Mees 1934) Felis et al. 2005

Synonym

Pediococcus urinaeequi

Information on morphological and physiological properties Morphology

[Ref.: #22981]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #22981]	Cell shape	sphere-shaped

[Ref.: #22981]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %97.002

[Ref.: #49095]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8746]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8746]

Culture medium growth

[Ref.: #8746]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8746]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8746]	growth	30 °C
[Ref.: #22981]	optimum	25.0-30.0 °C
[Ref.: #49095]	growth	37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #8746]	Temperature range	mesophilic
[Ref.: #22981]	Temperature range	mesophilic
[Ref.: #49095]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #22981]			minimum	6.5-7.0
[Ref.: #22981]			optimum	8.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22981]	Oxygen tolerance	facultative anaerobe
[Ref.: #49095]	Oxygen tolerance	microaerophile

[Ref.: #22981]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

[Ref.: #8746]	Murein short key	A11
[Ref.: #8746]	Murein types	A1alpha L-Lys-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22981]	dextrin ChEBI	+	builds acid from
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22981]	glycerol ChEBI	-	builds acid from
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22981]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22981]	melezitose ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22981]	sorbitol ChEBI	-	builds acid from
[Ref.: #22981]	starch ChEBI	-	builds acid from
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22981]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22981]	trehalose ChEBI	+	builds acid from
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #22981]		catalase	-	1.11.1.6

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #49095]

Fatty acid	Percentage	ECL
C18:1 ω9c	28.4	17.769
C16:0	22.5	16
C18:0	6.8	18
C14:0	5.8	14
C18:2 ω6,9c/C18:0 ANTE	4.3	17.724
C16:1 ω7c/C15:0 ISO 2OH	2.3	15.85
Unidentified	1.4	13.863
Unidentified	1	13.775

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8746]	14634	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	-	+	+	+	+	+	+	+	-	+	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+/-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8746]	Sample type/isolated from	horse urine

[Ref.: #49095]	Sample type/isolated from	Horse urine

[Ref.: #67770]	Sample type/isolated from	Horse, urine
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Equidae (Horse)
#Host Body Product	#Fluids	#Urine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC153547 (>99% sequence identity) for Aerococcus from Microbeatlas

Aquatic Samples	13880
Soil Samples	8338
Animal Samples	90338
Plant Samples	4042
Total Samples	116598

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8746]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aerococcus urinaeequi gene for 16S ribosomal RNA, partial sequence, strain: JCM 12519	LC153547	1372	ENA	51665 tax ID
[Ref.: #8746]	Pediococcus urinaeequi DNA for 16S rRNA, partial sequence	D87677	1419	ENA	51665 tax ID
[Ref.: #20218]	Pediococcus urinaeequi ATCC 29723 16S ribosomal RNA gene, partial sequence	AF429541	514	ENA	51665 tax ID	*
[Ref.: #20218]	Pediococcus urinaeequi strain ATCC 29723 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF429628	539	ENA	51665 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aerococcus urinaeequi DSM 20341 = CCUG 28094	GCA_000425085	scaffold	GenBank	1120952 tax ID
[Ref.: #66792]	Aerococcus urinaeequi CCUG28094	GCA_001543205	complete	GenBank	51665 tax ID	*
[Ref.: #66792]	Aerococcus urinaeequi DSM 20341	1120952.3	wgs	PATRIC	1120952 tax ID	*
[Ref.: #66792]	Aerococcus urinaeequi strain CCUG28094	51665.4	complete	PATRIC	51665 tax ID	*
[Ref.: #66792]	Aerococcus urinaeequi CCUG28094	2671180343	complete	JGI IMG/M	51665 tax ID	*
[Ref.: #66792]	Aerococcus urinaeequi DSM 20341	2524614650	draft	JGI IMG/M	1120952 tax ID	*

[Ref.: #8746]	GC-content	39.5 mol%
[Ref.: #8746]	GC-content	40.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	40 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	39.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aerococcus urinaeequi CCUG28094 NCBI: GCA_001543205.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aerococcus urinaeequi CCUG28094 NCBI: GCA_001543205.1
[Ref.: #69480]	flagellated	no	96.919	yes
[Ref.: #69480]	gram-positive	yes	95.717	yes
[Ref.: #69480]	anaerobic	no	94.47	yes
[Ref.: #69480]	aerobic	no	93.449	no
[Ref.: #69480]	halophile	yes	92.228	no
[Ref.: #69480]	spore-forming	no	96.44	yes
[Ref.: #69480]	thermophile	no	99.149	no
[Ref.: #69480]	glucose-util	yes	90.199	no
[Ref.: #69480]	motile	no	97.559	yes
[Ref.: #69480]	glucose-ferment	yes	81.257	no

Availability in culture collections External links

[Ref.: #8746]

Culture collection no.

CCUG 28094, CIP 103442, NCIMB 701636, DSM 20341, ATCC 29723, JCM 12519, NCDO 1636, LMG 11420, LMG 13989

[Ref.: #69905]

SI-ID 3825

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Identification of an Aerococcus urinaeequi isolate by whole genome sequencing and average nucleotide identity analysis.	Zhou W, Gao S, Zheng J, Zhang Y, Zhou H, Zhang Z, Cao X, Shen H	J Glob Antimicrob Resist	10.1016/j.jgar.2022.04.013	2022	*
Genetics	Complete Genome Sequences of Aerococcus christensenii CCUG 28831T, Aerococcus sanguinicola CCUG 43001T, Aerococcus urinae CCUG 36881T, Aerococcus urinaeequi CCUG 28094T, Aerococcus urinaehominis CCUG 42038 BT, and Aerococcus viridans CCUG 4311T.	Carkaci D, Dargis R, Nielsen XC, Skovgaard O, Fuursted K, Christensen JJ	Genome Announc	10.1128/genomeA.00302-16	2016	*

References

#8746

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20341

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22981

Giovanna E. Felis,Sandra Torriani,Franco Dellaglio: Reclassification of Pediococcus urinaeequi (ex Mees 1934) Garvie 1988 as Aerococcus urinaeequi comb. nov.. IJSEM 55: 1325 - 1327 2005 ( DOI 10.1099/ijs.0.63324-0 , PubMed 15879276 )

#49095 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28094

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69905

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3825.1 )

* These data were automatically processed and therefore are not curated

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Aerococcus urinaeequi CCUG28094

Aerococcus urinaeequi CCUG28094

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