Campylobacter cuniculorum (CIP 110020, DSM 23162, CCUG 56289)

Name: Campylobacter cuniculorum (CIP 110020, DSM 23162, CCUG 56289)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2140

Type strain

Strain Designation 150B

Culture col. no. CIP 110020 DSM 23162 CCUG 56289 LMG 24588 150B

NCBI tax ID(s) 1121267 374106

Special Collections DSMZ CCUG CIP Literature strains

History <- CCUG <- M. Rossi, Dept. Vet. Public Health and Animal Pathology, Univ. Bologna, Italy CIP <- 2009, CCUG <- M. Rossi, Bologna Univ., Bologna, Italy: strain 150B

Links

Campylobacter cuniculorum 150B is a microaerophile, Gram-negative, motile bacterium that was isolated from rabbit caecal contents Oryctolagus cuniculus.

Gram-negative motile rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 292326

LMG 24588,CCUG 56289,CIP 110020,DSM 23162

@ref 20215

Last LPSN update 2026-02-09 11:18:14

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter cuniculorum

Full scientific name Campylobacter cuniculorum Zanoni et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29146	negative	1.9-3.3 µm	0.2-0.4 µm	rod-shaped
118817	negative			rod-shaped
125439	negative				96.2
125438	negative				97.955

Colony morphology

60903

Incubation period3 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16740	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40639	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
118817	CIP Medium 45	Medium recipe at CIP
118817	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16740	positive	growth	37
29146	positive	growth	37-42
29146	positive	optimum	39.5
40639	positive	growth	37
60903	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
29146	positive	optimum	4	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16740	microaerophile
29146	microaerophile
60903	microaerophile
118817	microaerophile
125439	microaerophile	93.6

Spore formation

@ref	Spore formation	Confidence
125439		97.3
125438		93.054

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29146	NaCl	positive	optimum	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29146	30089 ChEBI	acetate	+	carbon source
68373	30089 ChEBI	acetate	-	assimilation	from API CAM
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68373	25115 ChEBI	malate	-	assimilation	from API CAM
29146	17632 ChEBI	nitrate	+	reduction
118817	17632 ChEBI	nitrate	+	reduction
118817	16301 ChEBI	nitrite	-	reduction
68373	78019 ChEBI	triphenyltetrazolium chloride	+	reduction	from API CAM
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Sensitivity conc.
68373	48923	erythromycin		14 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM
118817	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
16740	catalase	+	1.11.1.6
29146	catalase	+	1.11.1.6
118817	catalase	+	1.11.1.6
68373	catalase	+	1.11.1.6	from API CAM
68382	cystine arylamidase	-	3.4.11.3	from API zym
29146	cytochrome oxidase	+	1.9.3.1
16740	cytochrome-c oxidase	+	1.9.3.1
68373	esterase	+		from API CAM
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68373	L-aspartate arylamidase	-	3.4.11.21	from API CAM
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118817	oxidase	+
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68382	trypsin	-	3.4.21.4	from API zym
118817	urease	-	3.5.1.5
68373	urease	-	3.5.1.5	from API CAM
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118817	-	-	+	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
16740	-	+	+	-	+/-	+	-	+	-	+	-	-	+	+	+	-	+	-	-	-	+
16740	-	-	+	-	-	+	-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Leporidae (Rabbit/Hare)
#Host Body Product	#Gastrointestinal tract	#Caecal content

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Host species
16740	rabbit caecal contents Oryctolagus cuniculus						Oryctolagus cuniculus
60903	Rabbit caecal contents	2005-03-01	Emilia Romagna region	Italy	ITA	Europe
118817	Animal, Rabbit, caecal contents		Emilia Romagna region	Italy	ITA	Europe

Taxonmaps

69479

Global distribution of 16S sequence DQ400345 (>99% sequence identity) for Campylobacter cuniculorum subclade from Microbeatlas

Aquatic Samples	102
Soil Samples	16
Animal Samples	2901
Plant Samples	4
Total Samples	3023

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
16740	yes, in single cases	1	Risk group (German classification) According to TRBA 466
118817		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM210433v1 assembly for Campylobacter cuniculorum DSM 23162 = LMG 24588	complete	GCA_002104335	1031742.3	2773857804	1121267	98.19
66792	ASM62100v1 assembly for Campylobacter cuniculorum DSM 23162 = LMG 24588	scaffold	GCA_000621005	1121267.3	2558309001	1121267	69.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16740	Campylobacter cuniculorum strain 150B 16S ribosomal RNA gene, partial sequence	DQ400345	1390		1121267

GC content

@ref	GC-content (mol%)	Method
16740	32.4	high performance liquid chromatography (HPLC)
29146	32.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter cuniculorum LMG 24588 strain LMG 24588
PATRIC: 1031742.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	93.60	no
125439	gram_stain	BacteriaNetⓘ	negative	96.20	no
125439	motility	BacteriaNetⓘ	no	67.80	no
125439	spore_formation	BacteriaNetⓘ	no	97.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter cuniculorum DSM 23162 = LMG 24588 LMG 24588
NCBI: GCA_002104335.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.96	yes
125438	anaerobic	anaerobicⓘ	no	78.99	no
125438	aerobic	aerobicⓘ	no	86.93	yes
125438	spore-forming	spore-formingⓘ	no	93.05	no
125438	thermophilic	thermophileⓘ	no	89.25	yes
125438	flagellated	motile2+ⓘ	yes	62.73	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genome editing with natural and engineered CjCas9 orthologs.	Gao S, Wang Y, Qi T, Wei J, Hu Z, Liu J, Sun S, Liu H, Wang Y.	Mol Ther	10.1016/j.ymthe.2023.01.029	2023
	Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance.	Kojima KK, Kobayashi I.	BMC Genomics	10.1186/s12864-015-2021-3	2015
Genetics	Comparative genomics of Campylobacter concisus: Analysis of clinical strains reveals genome diversity and pathogenic potential.	Gemmell MR, Berry S, Mukhopadhya I, Hansen R, Nielsen HL, Bajaj-Elliott M, Nielsen H, Hold GL.	Emerg Microbes Infect	10.1038/s41426-018-0118-x	2018
Phylogeny	Characterization of Swedish Campylobacter coli clade 2 and clade 3 water isolates.	Nilsson A, Skarp A, Johansson C, Kaden R, Engstrand L, Rautelin H.	Microbiologyopen	10.1002/mbo3.583	2018
Enzymology	Biological roles of the O-methyl phosphoramidate capsule modification in Campylobacter jejuni.	van Alphen LB, Wenzel CQ, Richards MR, Fodor C, Ashmus RA, Stahl M, Karlyshev AV, Wren BW, Stintzi A, Miller WG, Lowary TL, Szymanski CM.	PLoS One	10.1371/journal.pone.0087051	2014
Phylogeny	Campylobacter Abundance in Breastfed Infants and Identification of a New Species in the Global Enterics Multicenter Study.	Bian X, Garber JM, Cooper KK, Huynh S, Jones J, Mills MK, Rafala D, Nasrin D, Kotloff KL, Parker CT, Tennant SM, Miller WG, Szymanski CM.	mSphere	10.1128/msphere.00735-19	2020
Genetics	Complete Genome Sequence of the Campylobacter cuniculorum Type Strain LMG 24588.	Miller WG, Yee E, Revez J, Bono JL, Rossi M	Genome Announc	10.1128/genomeA.00543-17	2017
Phylogeny	Campylobacter cuniculorum sp. nov., from rabbits.	Zanoni RG, Debruyne L, Rossi M, Revez J, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.007286-0	2009

References

#16740	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23162
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25570	IJSEM 1666 2009 ( DOI 10.1099/ijs.0.007286-0 , PubMed 19542108 )
#29146	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25570
#40639	; Curators of the CIP;
#60903	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56289
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118817	Collection of Institut Pasteur ; Curators of the CIP; CIP 110020
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter cuniculorum (CIP 110020, DSM 23162, CCUG 56289)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API CAM

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002104335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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