Name: Campylobacter hominis CH001A
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2138

Type strain:

Species: Campylobacter hominis

Strain Designation: CH001A

Culture col. no.: DSM 21671, CCUG 45161, CIP 107682, LMG 19568, NCTC 13146

Strain history: CIP <- 2008, DSMZ <- CCUG <- S.L.W. On, Danish Vet. Lab., Copenhagen, Denmark

NCBI tax ID(s): 76517 (species)

SI-ID 13248

LMG 19568, ATCC BAA-381, NCTC 13146, CIP 107682, CCUG 45161, DSM 21671

Special Collections

Other strains from Campylobacter hominis

Section

When using BacDive for research please cite our paper

Campylobacter hominis CH001A is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from faeces .

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Campylobacteraceae*
	Genus	*Campylobacter*
	Species	**Campylobacter hominis**
	Full Scientific Name (LPSN)	Campylobacter hominis Lawson et al. 2001

Synonym

"Candidatus Campylobacter hominis"

Information on morphological and physiological properties Morphology

[Ref.: #23069]	Gram stain	negative
[Ref.: #119939]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99.8
[Ref.: #125438]	Gram stain	negative Confidence in %94.801

[Ref.: #23069]	Cell length	0.5-1.8 µm

[Ref.: #23069]	Cell width	0.25-0.5 µm

[Ref.: #23069]	Cell shape	rod-shaped
[Ref.: #119939]	Cell shape	rod-shaped

[Ref.: #23069]	Motility	no
[Ref.: #119939]	Motility	no

[Ref.: #23069]	Type of hemolysis	gamma
[Ref.: #23069]	Colony size	1.0 mm
[Ref.: #23069]	Colony color	grey

[Ref.: #15877]	Incubation period	2-3 days

[Ref.: #56673]	Incubation period	>3 days

Information on culture and growth conditions Culture and growth conditions

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

FAA medium

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

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Culture medium growth

[Ref.: #40714]

Culture medium composition

expand / minimize

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Culture medium

CIP Medium 45

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 6

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

Brucella broth

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #15877]		growth	37 °C
[Ref.: #23069]	negative	growth	18.0-22.0 °C
[Ref.: #23069]	negative	growth	25.0 °C
[Ref.: #23069]	negative	growth	42.0 °C
[Ref.: #23069]		optimum	37.0 °C
[Ref.: #40714]		growth	37 °C
[Ref.: #56673]		growth	37 °C
[Ref.: #119939]	negative	growth	41 °C
[Ref.: #119939]	negative	growth	30 °C
[Ref.: #119939]	negative	growth	25 °C
[Ref.: #119939]	negative	growth	10 °C
[Ref.: #119939]	negative	growth	5 °C
[Ref.: #119939]		growth	37 °C
[Ref.: #119939]	negative	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15877]	Oxygen tolerance	anaerobe
[Ref.: #56673]	Oxygen tolerance	obligate anaerobe
[Ref.: #119939]	Oxygen tolerance	anaerobe

[Ref.: #23069]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %99.2
[Ref.: #125438]	Ability of spore formation	no Confidence in %95.989

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #119939]		NaCl	no	growth	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23069]	1h-indol-3-ylacetic acid ChEBI	-	hydrolysis
[Ref.: #68373]	acetate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	D-glucose ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	hippurate ChEBI	-	hydrolysis	* from API CAM
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #119939]	nitrate ChEBI	+	reduction
[Ref.: #119939]	nitrite ChEBI	-	reduction
[Ref.: #68373]	propionate ChEBI	-	assimilation	* from API CAM
[Ref.: #23069]	selenite ChEBI	-	reduction
[Ref.: #23069]	triphenyltetrazolium chloride ChEBI	-	reduction
[Ref.: #68373]	urea ChEBI	-	hydrolysis	* from API CAM
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68373]	cefazolin ChEBI	yes	224	µg	* from API CAM
[Ref.: #68373]	erythromycin ChEBI	yes	14	µg	* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg	* from API CAM

	Metabolite	Production
[Ref.: #23069]	hydrogen sulfide ChEBI	no
[Ref.: #119939]	indole ChEBI	no
[Ref.: #68373]	hydrogen sulfide ChEBI	no	* from API CAM

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #23069]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68373]	alkaline phosphatase	-	3.1.3.1	* from API CAM
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #15877]	catalase	-	1.11.1.6
[Ref.: #23069]	catalase	-	1.11.1.6
[Ref.: #119939]	catalase	-	1.11.1.6
[Ref.: #68373]	catalase	-	1.11.1.6	* from API CAM
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #23069]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68373]	esterase	-		* from API CAM
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119939]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #119939]	gelatinase	-
[Ref.: #23069]	hippurate hydrolase	-	3.5.1.32
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119939]	oxidase	+
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #23069]	urease	-	3.5.1.5
[Ref.: #119939]	urease	-	3.5.1.5
[Ref.: #68373]	urease	-	3.5.1.5	* from API CAM
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #15877]	4120	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	not determinedn.d.
[Ref.: #15877]	4324	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119939]	10563	-	+	-	+	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23069]	Sample type/isolated from	faeces (healthy adult human male)
[Ref.: #23069]	Geographic location (country and/or sea, region)	London
[Ref.: #23069]	Country	United Kingdom
[Ref.: #23069]	Country ISO 3 Code	GBR
[Ref.: #23069]	Continent	Europe
[Ref.: #23069]	Enrichment culture	modified charcoal cefoperazone deoxycholate agar (CCDA; Oxoid)
[Ref.: #23069]	Enrichment culture duration	21 days
[Ref.: #23069]	Enrichment culture temperature	37.0 ̊C
[Ref.: #23069]	Isolation/enrichment procedure	membrane filter method

[Ref.: #56673]	Sample type/isolated from	Human feces
[Ref.: #56673]	Geographic location (country and/or sea, region)	London
[Ref.: #56673]	Country	United Kingdom
[Ref.: #56673]	Country ISO 3 Code	GBR
[Ref.: #56673]	Continent	Europe

[Ref.: #15877]	Sample type/isolated from	faeces of a healthy adult human male
[Ref.: #15877]	Geographic location (country and/or sea, region)	London
[Ref.: #15877]	Country	United Kingdom
[Ref.: #15877]	Country ISO 3 Code	GBR
[Ref.: #15877]	Continent	Europe

[Ref.: #119939]	Sample type/isolated from	Human, Feces
[Ref.: #119939]	Geographic location (country and/or sea, region)	London
[Ref.: #119939]	Country	United Kingdom
[Ref.: #119939]	Country ISO 3 Code	GBR
[Ref.: #119939]	Continent	Europe
[Ref.: #119939]	Isolation date	2001
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ251584 (>99% sequence identity) for Campylobacter hominis subclade from Microbeatlas

Aquatic Samples	457
Soil Samples	394
Animal Samples	42330
Plant Samples	121
Total Samples	43302

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15877]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119939]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15877]	Campylobacter hominis partial 16S rRNA gene, strain NCTC 13146	AJ251584	1414	GenBank ENA	76517 tax ID
[Ref.: #20218]	Campylobacter hominis strain NCTC 13146 16S ribosomal RNA (rrs) gene, partial sequence	DQ174182	1339	GenBank ENA	76517 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Campylobacter hominis NCTC13146	GCA_900446395	contig	GenBank ENA	76517 tax ID	*
[Ref.: #66792]	Campylobacter hominis strain FDAARGOS_1467	76517.51	complete	PATRIC	76517 tax ID	*
[Ref.: #66792]	Campylobacter hominis strain NCTC13146	76517.4	wgs	PATRIC	76517 tax ID	*
[Ref.: #66792]	Campylobacter hominis NCTC 13146	2808606638	draft	JGI IMG/M	76517 tax ID	*
[Ref.: #66792]	Campylobacter hominis strain FDAARGOS_1467	76517.53	complete	PATRIC	76517 tax ID	*
[Ref.: #66792]	Campylobacter hominis strain FDAARGOS_1467	76517.54	complete	PATRIC	76517 tax ID	*

[Ref.: #23069]

GC-content

32.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter hominis strain FDAARGOS_1467 strain Not applicable PATRIC: 76517.51
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	94.801	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	59.665	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	90.879	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	95.989	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	89.483	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	75.304	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter hominis strain FDAARGOS_1467 PATRIC: 76517.53
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	66.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	70.2

Availability in culture collections External links

[Ref.: #15877]

Culture collection no.

DSM 21671, CCUG 45161, CIP 107682, LMG 19568, NCTC 13146

[Ref.: #71766]

SI-ID 13248

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Campylobacter hominis sp. nov., from the human gastrointestinal tract.	Lawson AJ, On SL, Logan JM, Stanley J	Int J Syst Evol Microbiol	10.1099/00207713-51-2-651	2001	*

References

#15877

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21671

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23069

A. J. Lawson,S. L. On,J. M. Logan,J. Stanley: Campylobacter hominis sp. nov., from the human gastrointestinal tract.. IJSEM 51: 651 - 660 2001 ( DOI 10.1099/00207713-51-2-651 , PubMed 11321111 )

#40714 ; Curators of the CIP;
#56673 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45161

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68373

Automatically annotated from API CAM .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71766

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13248.1 )

#119939 Collection of Institut Pasteur ; Curators of the CIP; CIP 107682

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Search for species Campylobacter hominis in external resources:
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Campylobacter hominis strain FDAARGOS_1467 strain Not applicable

Campylobacter hominis strain FDAARGOS_1467

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