Campylobacter hominis (DSM 21671, CCUG 45161, CIP 107682)

Name: Campylobacter hominis (DSM 21671, CCUG 45161, CIP 107682)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2138

Type strain

Strain Designation CH001A

Culture col. no. DSM 21671 CCUG 45161 CIP 107682 LMG 19568 NCTC 13146 1 more

NCBI tax ID(s) 76517

Special Collections DSMZ CCUG CIP Literature strains

History DSMZ <- CCUG; CCUG 45161 <- S. L. W. On, Danish Vet. Lab.; CH001A CIP <- 2008, DSMZ <- CCUG <- S.L.W. On, Danish Vet. Lab., Copenhagen, Denmark

Links

Campylobacter hominis CH001A is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from faeces .

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13248

LMG 19568,ATCC BAA-381,NCTC 13146,CIP 107682,CCUG 45161,DSM 21671

@ref 20215

Last LPSN update 2026-05-29 08:25:25

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter hominis

Full scientific name Campylobacter hominis Lawson et al. 2001

Synonyms (1)

"Candidatus Campylobacter hominis"

BacDive ID	Other strains from **Campylobacter hominis** (2)	Type strain
151905	C. hominis CCUG 45162
151906	C. hominis CCUG 45163

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
23069	negative	0.5-1.8 µm	0.25-0.5 µm	rod-shaped
119939	negative			rod-shaped
125439	negative				99.421
125438	negative				94.801

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony size	Colony color	Incubation period
15877					2-3 days
23069	gamma	0	1.0 mm	grey
56673					>3 days
119939		0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15877	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
15877	CHOPPED MEAT MEDIUM (DSMZ Medium 78)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
23069	FAA medium		a rich medium which contains vitamin K, haemin, cysteine hydrochloride and l -arginine
40714	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119939	CIP Medium 45	Medium recipe at CIP
119939	CIP Medium 6	Medium recipe at CIP
119939	Brucella broth

Culture temp

@ref	Growth	Type	Temperature (°C)
15877	positive	growth	37
23069	negative	growth	18.0-22.0
23069	negative	growth	25.0
23069	negative	growth	42.0
23069	positive	optimum	37.0
40714	positive	growth	37
56673	positive	growth	37
119939	negative	growth	41
119939	negative	growth	30
119939	negative	growth	25
119939	negative	growth	10
119939	negative	growth	5
119939	positive	growth	37
119939	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
15877	anaerobe
56673	obligate anaerobe
119939	anaerobe

Spore formation

@ref	Spore formation	Confidence
23069
125439		99.822
125438		95.989

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119939	NaCl		growth	3.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23069	16411 ChEBI	1h-indol-3-ylacetic acid	-	hydrolysis
68373	30089 ChEBI	acetate	-	assimilation	from API CAM
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	+	assimilation	from API CAM
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68373	25115 ChEBI	malate	-	assimilation	from API CAM
119939	17632 ChEBI	nitrate	+	reduction
119939	16301 ChEBI	nitrite	-	reduction
68373	17272 ChEBI	propionate	-	assimilation	from API CAM
23069	18212 ChEBI	selenite	-	reduction
23069	78019 ChEBI	triphenyltetrazolium chloride	-	reduction
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite
23069	16136 ChEBI	hydrogen sulfide
68373	16136 ChEBI	hydrogen sulfide	from API CAM
119939	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
23069	alkaline phosphatase	-	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68373	alkaline phosphatase	-	3.1.3.1	from API CAM
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
15877	catalase	-	1.11.1.6
23069	catalase	-	1.11.1.6
119939	catalase	-	1.11.1.6
68373	catalase	-	1.11.1.6	from API CAM
68382	cystine arylamidase	+	3.4.11.3	from API zym
23069	cytochrome oxidase	+	1.9.3.1
68373	esterase	-		from API CAM
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
119939	gamma-glutamyltransferase	+	2.3.2.2
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
119939	gelatinase	-
23069	hippurate hydrolase	-	3.5.1.32
68373	L-arginine arylamidase	-		from API CAM
68373	L-aspartate arylamidase	-	3.4.11.21	from API CAM
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119939	oxidase	+
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68382	trypsin	+	3.4.21.4	from API zym
23069	urease	-	3.5.1.5
119939	urease	-	3.5.1.5
68373	urease	-	3.5.1.5	from API CAM
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119939	-	+	-	+	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
15877	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	not determinedn.d.
15877	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure	Isolation date
23069	faeces (healthy adult human male)	Homo sapiens	London	United Kingdom	GBR	Europe	modified charcoal cefoperazone deoxycholate agar (CCDA; Oxoid)	21 days	37.0	membrane filter method
56673	Human feces	Homo sapiens	London	United Kingdom	GBR	Europe
15877	faeces of a healthy adult human male	Homo sapiens	London	United Kingdom	GBR	Europe
119939	Human, Feces	Homo sapiens	London	United Kingdom	GBR	Europe					2001

Taxonmaps

69479

Global distribution of 16S sequence AJ251584 (>99% sequence identity) for Campylobacter hominis subclade from Microbeatlas

Aquatic Samples	457
Soil Samples	394
Animal Samples	42330
Plant Samples	121
Total Samples	43302

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15877	1	Risk group (German classification) According to TRBA 466
119939	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Campylobacter hominis strain FDAARGOS_1467	complete		76517.53		76517	99.4
66792	Campylobacter hominis strain FDAARGOS_1467	complete		76517.54		76517	99.4
66792	Campylobacter hominis strain FDAARGOS_1467	complete		76517.52		76517	99.4
124043	ASM1993094v1 assembly for Campylobacter hominis FDAARGOS_1467	complete	GCA_019930945	76517.51		76517	98.41
66792	55609_G01 assembly for Campylobacter hominis NCTC13146	contig	GCA_900446395	76517.4	2808606638	76517	77.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Campylobacter hominis strain NCTC 13146 16S ribosomal RNA (rrs) gene, partial sequence	DQ174182	1339		76517
15877	Campylobacter hominis partial 16S rRNA gene, strain NCTC 13146	AJ251584	1414		76517

GC content

23069

GC-content (mol%)32.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter hominis strain FDAARGOS_1467
BV-BRC: 76517.52

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	70.24	no
125439	gram_stain	BacteriaNetⓘ	negative	99.42	no
125439	motility	BacteriaNetⓘ	no	74.71	no
125439	spore_formation	BacteriaNetⓘ	no	99.82	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter hominis strain FDAARGOS_1467 strain Not applicable
PATRIC: 76517.51

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.80	yes
125438	anaerobic	anaerobicⓘ	yes	59.67	yes
125438	aerobic	aerobicⓘ	no	90.88	yes
125438	spore-forming	spore-formingⓘ	no	95.99	no
125438	thermophilic	thermophileⓘ	no	89.48	yes
125438	flagellated	motile2+ⓘ	no	75.30	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Campylobacter hominis sp. nov., from the human gastrointestinal tract.	Lawson AJ, On SL, Logan JM, Stanley J	Int J Syst Evol Microbiol	10.1099/00207713-51-2-651	2001

References

#15877	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21671
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23069	A. J. Lawson,S. L. On,J. M. Logan,J. Stanley: Campylobacter hominis sp. nov., from the human gastrointestinal tract.. IJSEM 51: 651 - 660 2001 ( DOI 10.1099/00207713-51-2-651 , PubMed 11321111 )
#40714	; Curators of the CIP;
#56673	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45161
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119939	Collection of Institut Pasteur ; Curators of the CIP; CIP 107682
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter hominis (DSM 21671, CCUG 45161, CIP 107682)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API CAM

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019930945

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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