Campylobacter curvus CCUG 13146 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from human jaw abscess.
Gram-negative rod-shaped anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Epsilonproteobacteria |
| Order Campylobacterales |
| Family Campylobacteraceae |
| Genus Campylobacter |
| Species Campylobacter curvus |
| Full scientific name Campylobacter curvus (Tanner et al. 1984) Vandamme et al. 1991 |
| Synonyms (1) |
| BacDive ID | Other strains from Campylobacter curvus (5) | Type strain |
|---|---|---|
| 142321 | C. curvus CCUG 11644 | |
| 146048 | C. curvus CCUG 30255 | |
| 146179 | C. curvus CCUG 30521, LMG 12273, LMG 11763 | |
| 150857 | C. curvus CCUG 42571 | |
| 152743 | C. curvus CCUG 47528 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2649 | BTU MEDIUM (DSMZ Medium 413) | Medium recipe at MediaDive | Name: BTU MEDIUM (DSMZ Medium 413) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l Na-formiate 1.8 g/l Na-fumarate 1.8 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Distilled water | ||
| 2649 | CAMPYLOBACTER RECTUS MEDIUM (DSMZ Medium 338) | Medium recipe at MediaDive | Name: CAMPYLOBACTER RECTUS MEDIUM (DSMZ Medium 338) Composition: Yeast extract 11.0 g/l Trypticase 9.0 g/l Na-fumarate 3.0 g/l Beef extract 3.0 g/l NaCl 2.0 g/l Na-formate 2.0 g/l Na2HPO4 0.4 g/l Na2CO3 0.25 g/l Haemin 0.005 g/l Resazurin 0.001 g/l Distilled water | ||
| 40775 | MEDIUM 6 - Columbia agar with 10 % horse blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |||
| 2649 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 118824 | CIP Medium 6 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 118824 | NaCl | growth | 3.5 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68373 | 16947 ChEBI | citrate | - | assimilation | from API CAM |
| 68373 | 17634 ChEBI | D-glucose | - | assimilation | from API CAM |
| 118824 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68373 | 17632 ChEBI | nitrate | - | reduction | from API CAM |
| 118824 | 17632 ChEBI | nitrate | + | reduction | |
| 118824 | 16301 ChEBI | nitrite | + | reduction | |
| 68373 | 17272 ChEBI | propionate | - | assimilation | from API CAM |
| 68373 | 30031 ChEBI | succinate | + | assimilation | from API CAM |
| 68373 | 78019 ChEBI | triphenyltetrazolium chloride | - | reduction | from API CAM |
| 68373 | 16199 ChEBI | urea | - | hydrolysis | from API CAM |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68373 | alkaline phosphatase | + | 3.1.3.1 | from API CAM |
| 2649 | catalase | - | 1.11.1.6 | |
| 118824 | catalase | + | 1.11.1.6 | |
| 2649 | cytochrome-c oxidase | + | 1.9.3.1 | |
| 68373 | esterase | + | from API CAM | |
| 68373 | gamma-glutamyltransferase | - | 2.3.2.2 | from API CAM |
| 68373 | L-aspartate arylamidase | + | 3.4.11.21 | from API CAM |
| 118824 | oxidase | + | ||
| 118824 | urease | - | 3.5.1.5 | |
| 68373 | urease | - | 3.5.1.5 | from API CAM |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||
| @ref | 45899 | ||||||||||||||||||||||||||||||||||||||||||
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| @ref | URE | Reduction of nitrateNIT | EsteraseEST | HIP | GGT | TTC | PYRA | L-arginine arylamidaseArgA | L-aspartic acid arylamidaseAspA | PAL | H2S productionH2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | Erythromycin resistance (+) sensitivity (-)ERO | CAT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2649 | - | - | + | - | - | - | +/- | + | + | + | + | - | + | + | - | +/- | - | +/- | - | - | + | |
| 2649 | - | - | + | +/- | - | - | - | +/- | + | + | + | - | + | - | - | - | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | Campylobacter curvus strain FDAARGOS_1547 | complete | 200 | 98.2 | ||||
| 66792 | ASM1337212v1 assembly for Campylobacter curvus ATCC 35224 | complete | 200 | 98.17 | ||||
| 124043 | ASM2073622v1 assembly for Campylobacter curvus FDAARGOS_1547 | complete | 200 | 97.22 | ||||
| 66792 | ASM37632v1 assembly for Campylobacter curvus DSM 6644 | contig | 1121268 | 76.32 | ||||
| 66792 | ASM1297887v1 assembly for Campylobacter curvus ATCC 35224 | contig | 200 | 72.56 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Campylobacter curvus strain ATCC 35224 16S ribosomal RNA gene, partial sequence | JX912507 | 1434 | 200 | ||
| 20218 | Campylobacter curvus, complete 16S ribosomal RNA | L04313 | 1413 | 200 | ||
| 2649 | Campylobacter curvus strain ATCC 35224 16S ribosomal RNA (rrs) gene, partial sequence | DQ174165 | 1479 | 200 | ||
| 124043 | Campylobacter curvus gene for 16S rRNA, including IVS, partial sequence, strain: LMG7609. | AB501346 | 292 | 200 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | anaerobe | 97.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.90 | no |
| 125439 | motility | BacteriaNetⓘ | no | 74.50 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 95.29 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 63.32 | no |
| 125438 | aerobic | aerobicⓘ | no | 91.37 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 91.53 | no |
| 125438 | thermophilic | thermophileⓘ | no | 88.44 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 65.75 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enzymology | Detection of Campylobacter spp. in chicken fecal samples by real-time PCR. | Lund M, Nordentoft S, Pedersen K, Madsen M. | J Clin Microbiol | 10.1128/jcm.42.11.5125-5132.2004 | 2004 | |
| Enzymology | Reverse transcription and polymerase chain reaction amplification of rRNA for detection of Helicobacter species. | Engstrand L, Nguyen AM, Graham DY, el-Zaatari FA. | J Clin Microbiol | 10.1128/jcm.30.9.2295-2301.1992 | 1992 | |
| Phylogeny | Empyema associated with Campylobacter curvus infection. | Horio Y, Shiraishi Y, Watanabe N, Inoue S, Imanishi T, Asano K. | Respirol Case Rep | 10.1002/rcr2.234 | 2017 | |
| Genetics | Identification and specificity validation of unique and antimicrobial resistance genes to trace suspected pathogenic AMR bacteria and to monitor the development of AMR in non-AMR strains in the environment and clinical settings. | Rekadwad BN, Pramod N, Rao MPN, Hashem A, Avila-Quezada GD, Abd Allah EF. | Saudi J Biol Sci | 10.1016/j.sjbs.2023.103869 | 2023 | |
| Shotgun metagenomics of fecal samples from children in Peru reveals frequent complex co-infections with multiple Campylobacter species. | Parker CT, Schiaffino F, Huynh S, Paredes Olortegui M, Penataro Yori P, Garcia Bardales PF, Pinedo Vasquez T, Curico Huansi GE, Manzanares Villanueva K, Shapiama Lopez WV, Cooper KK, Kosek MN. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0010815 | 2022 | ||
| Phylogeny | Description of Campylobacter curvus and C. curvus-like strains associated with sporadic episodes of bloody gastroenteritis and Brainerd's diarrhea. | Abbott SL, Waddington M, Lindquist D, Ware J, Cheung W, Ely J, Janda JM. | J Clin Microbiol | 10.1128/jcm.43.2.585-588.2005 | 2005 | |
| Interactions between periodontal bacteria and human oral epithelial cells: Fusobacterium nucleatum adheres to and invades epithelial cells. | Han YW, Shi W, Huang GT, Kinder Haake S, Park NH, Kuramitsu H, Genco RJ. | Infect Immun | 10.1128/iai.68.6.3140-3146.2000 | 2000 | ||
| Phylogeny | Rapid identification of Campylobacter, Arcobacter, and Helicobacter isolates by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene. | Marshall SM, Melito PL, Woodward DL, Johnson WM, Rodgers FG, Mulvey MR. | J Clin Microbiol | 10.1128/jcm.37.12.4158-4160.1999 | 1999 | |
| Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. | Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ, Dymock D, Wade WG. | Appl Environ Microbiol | 10.1128/aem.64.2.795-799.1998 | 1998 | ||
| Molecular cloning and site-specific mutagenesis of a gene involved in arylsulfatase production in Campylobacter jejuni. | Yao R, Guerry P. | J Bacteriol | 10.1128/jb.178.11.3335-3338.1996 | 1996 | ||
| Enzymology | Direct polymerase chain reaction detection of Campylobacter jejuni and Campylobacter coli in raw milk and dairy products. | Wegmuller B, Luthy J, Candrian U. | Appl Environ Microbiol | 10.1128/aem.59.7.2161-2165.1993 | 1993 | |
| Enzymology | Purification and characterization of Campylobacter rectus surface layer proteins. | Nitta H, Holt SC, Ebersole JL. | Infect Immun | 10.1128/iai.65.2.478-483.1997 | 1997 | |
| Phylogeny | Differentiation of Campylobacter coli, Campylobacter jejuni, Campylobacter lari, and Campylobacter upsaliensis by a multiplex PCR developed from the nucleotide sequence of the lipid A gene lpxA. | Klena JD, Parker CT, Knibb K, Ibbitt JC, Devane PM, Horn ST, Miller WG, Konkel ME. | J Clin Microbiol | 10.1128/jcm.42.12.5549-5557.2004 | 2004 | |
| Phylogeny | Genotypic and phenotypic characterization of Helicobacter cinaedi and Helicobacter fennelliae strains isolated from humans and animals. | Kiehlbauch JA, Brenner DJ, Cameron DN, Steigerwalt AG, Makowski JM, Baker CN, Patton CM, Wachsmuth IK. | J Clin Microbiol | 10.1128/jcm.33.11.2940-2947.1995 | 1995 | |
| Enzymology | Analysis of cell surface antigens of Campylobacter rectus. | Kaneko T | Bull Tokyo Dent Coll | 1992 | ||
| Phylogeny | Campylobacter anatolicus sp. nov., a novel member of the genus Campylobacter isolated from feces of Anatolian Ground Squirrel (Spermophilus xanthoprymnus) in Turkey. | Aydin F, Abay S, Kayman T, Karakaya E, Mustak HK, Mustak IB, Bilgen N, Goncuoglu M, Duzler A, Guran O, Sahin O, Saticioglu IB | Syst Appl Microbiol | 10.1016/j.syapm.2021.126265 | 2021 |
| #2649 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6644 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40775 | ; Curators of the CIP; |
| #45899 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13146 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68373 | Automatically annotated from API CAM . |
| #118824 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103747 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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