Acetobacter senegalensis (DSM 18889, LMG 23690, CWBI-B418)

Name: Acetobacter senegalensis (DSM 18889, LMG 23690, CWBI-B418)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 21

Type strain

Strain Designation CWBI-B418

Culture col. no. DSM 18889 LMG 23690 CWBI-B418

NCBI tax ID(s) 1307918 446692

Special Collections DSMZ Literature strains

History DSMZ <- B. Ndoye, Centre Wallon de Biol. Industrielle, Univ. Liège, Belgium; CWBI-B418

Links

Acetobacter senegalensis CWBI-B418 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from mango fruit Mangifera indica L..

Gram-negative motile coccus-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 138992

DSM 120446,LMG 23690,DSM 18889,BCC 40091,TBRC 10

@ref 20215

Last LPSN update 2026-05-29 08:24:55

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acetobacter

Species Acetobacter senegalensis

Full scientific name Acetobacter senegalensis Ndoye et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
23236	negative	1.2-2.0 µm	0.8 µm	coccus-shaped
125439	negative				92.613
125438	negative				95.333

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
23236	0.6 mm	beige, opaque	circular	1 day	medium 13 agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7760	YPM MEDIUM (DSMZ Medium 360)	Medium recipe at MediaDive	Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water
23236	medium 13 agar		2.5 % D-mannitol, 0.5 % yeast extract, 0.3 %, peptone, 1.5 % agar
23236	YGM

Culture temp

@ref	Growth	Type	Temperature (°C)
7760	positive	growth	35
23236	positive	optimum	35
23236		growth	35
23236	positive	growth	28-40

Physiology and metabolism

Oxygen tolerance

23236

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
23236
125439		98.783
125438		91.816

Tolerance

@ref	Compound	Percentage
23236	Ethanol	10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23236	28938 ChEBI	ammonium	+	nitrogen source
23236	16236 ChEBI	ethanol	+	carbon source
23236	17754 ChEBI	glycerol	+	carbon source
23236	17306 ChEBI	maltose	-	carbon source
23236	17790 ChEBI	methanol	-	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23236	16808 ChEBI	2-dehydro-D-gluconate
23236	17426 ChEBI	5-dehydro-D-gluconate

Enzymes

@ref	Value	Activity	Ec
23236	catalase	+	1.11.1.6
23236	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
7760	mango fruit Mangifera indica L.	Mangifera indica	Casamance	Senegal	SEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence AM748710 (>99% sequence identity) for Acetobacter tropicalis from Microbeatlas

Aquatic Samples	25
Soil Samples	101
Animal Samples	218
Plant Samples	77
Total Samples	421

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7760	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM158099v1 assembly for Acetobacter senegalensis LMG 23690	contig	GCA_001580995	446692.4	2728368907	446692	47.55
124043	ASM2599543v1 assembly for Acetobacter senegalensis DSM 18889	contig	GCA_025995435	1307918.3	8116963062	1307918	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Acetobacter senegalensis partial 16S rRNA gene, type strain LMG 23690T	AM748710	1444	446692
20218	Acetobacter senegalensis partial 16S rRNA gene, strain LMG 23690	HG424424	1444	446692
7760	Acetobacter senegalensis strain CWBI-B418 16S ribosomal RNA gene, partial sequence	AY883036	1386	446692

GC content

@ref	GC-content (mol%)	Method
7760	56.0
23236	56.00	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM158099v1 assembly for Acetobacter senegalensis LMG 23690
BV-BRC: 446692.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	65.92	no
125439	gram_stain	BacteriaNetⓘ	negative	92.61	no
125439	motility	BacteriaNetⓘ	yes	64.42	no
125439	spore_formation	BacteriaNetⓘ	no	98.78	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetobacter senegalensis strain LMG 23690
PATRIC: 446692.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.33	no
125438	anaerobic	anaerobicⓘ	no	93.29	yes
125438	spore-forming	spore-formingⓘ	no	91.82	yes
125438	aerobic	aerobicⓘ	yes	88.04	yes
125438	thermophilic	thermophileⓘ	no	97.47	yes
125438	flagellated	motile2+ⓘ	no	69.86	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Volatile communication in Actinobacteria: a language for secondary metabolism regulation.	Cuervo L, Mendez C, Salas JA, Olano C, Malmierca MG.	Microb Cell Fact	10.1186/s12934-024-02456-4	2024
Metabolism	The role of protein modifications in senescence of freeze-dried Acetobacter senegalensis during storage.	Shafiei R, Zarmehrkhorshid R, Bentaib A, Babanezhad M, Leprince P, Delvigne F, Thonart P.	Microb Cell Fact	10.1186/1475-2859-13-26	2014
Proteome	Effect of Sequential Acclimation to Various Carbon Sources on the Proteome of Acetobacter senegalensis LMG 23690(T) and Its Tolerance to Downstream Process Stresses.	Shafiei R, Leprince P, Sombolestani AS, Thonart P, Delvigne F	Front Microbiol	10.3389/fmicb.2019.00608	2019
Phylogeny	Acetobacter garciniae sp. nov., an acetic acid bacterium isolated from fermented mangosteen peel in Thailand.	Yukphan P, Charoenyingcharoen P, Kingcha Y, Likhitrattanapisal S, Muangham S, Tanasupawat S, Yamada Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005052	2021
Phylogeny	Acetobacter senegalensis sp. nov., a thermotolerant acetic acid bacterium isolated in Senegal (sub-Saharan Africa) from mango fruit (Mangifera indica L.).	Ndoye B, Cleenwerck I, Engelbeen K, Dubois-Dauphin R, Guiro AT, Van Trappen S, Willems A, Thonart P	Int J Syst Evol Microbiol	10.1099/ijs.0.64678-0	2007

References

#7760	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18889
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23236	Bassirou Ndoye, Ilse Cleenwerck, Katrien Engelbeen, Robin Dubois-Dauphin, Amadou Tidiane Guiro, Stefanie Van Trappen, Anne Willems, Phillipe Thonart: Acetobacter senegalensis sp. nov., a thermotolerant acetic acid bacterium isolated in Senegal (sub-Saharan Africa) from mango fruit (Mangifera indica L.). IJSEM 57: 1576 - 1581 2007 ( DOI 10.1099/ijs.0.64678-0 , PubMed 17625197 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acetobacter senegalensis (DSM 18889, LMG 23690, CWBI-B418)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Tolerance

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001580995

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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