Name: Acetobacter senegalensis CWBI-B418
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 21

Type strain:

Species: Acetobacter senegalensis

Strain Designation: CWBI-B418

Culture col. no.: DSM 18889, LMG 23690

Strain history: <- B. Ndoye, Centre Wallon de Biol. Industrielle, Univ. Liège, Belgium; CWBI-B418

NCBI tax ID(s): 1307918 (strain), 446692 (species)

SI-ID 138992

LMG 23690, DSM 18889, BCC 40091, TBRC 10

Special Collections

Section

Acetobacter senegalensis CWBI-B418 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from mango fruit Mangifera indica L..

coccus-shaped
colony-forming
Gram-negative
motile
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acetobacter*
	Species	**Acetobacter senegalensis**
	Full Scientific Name (LPSN)	Acetobacter senegalensis Ndoye et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #23236]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %95.333

[Ref.: #23236]	Cell length	1.2-2.0 µm

[Ref.: #23236]	Cell width	0.8 µm

[Ref.: #23236]	Cell shape	coccus-shaped

[Ref.: #23236]	Motility	yes

[Ref.: #23236]	Colony size	0.6 mm
[Ref.: #23236]	Colony color	beige, opaque
[Ref.: #23236]	Colony shape	circular
[Ref.: #23236]	Incubation period	1 day
[Ref.: #23236]	Cultivation medium used	medium 13 agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7760]

Culture medium

YPM MEDIUM (DSMZ Medium 360)

[Ref.: #7760]

Culture medium growth

[Ref.: #7760]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7760]

Culture medium composition

expand / minimize

[Ref.: #23236]

Culture medium

medium 13 agar

[Ref.: #23236]

Culture medium growth

[Ref.: #23236]

Culture medium composition

expand / minimize

[Ref.: #23236]

Culture medium

YGM

[Ref.: #23236]

Culture medium growth

		Temperature
[Ref.: #7760]	growth	35 °C
[Ref.: #23236]	optimum	35 °C
[Ref.: #23236]	growth	35 °C
[Ref.: #23236]	growth	28-40 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23236]

Oxygen tolerance

obligate aerobe

[Ref.: #23236]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %91.816

[Ref.: #23236]	Name of tolerated compound	Ethanol
[Ref.: #23236]	Tolerance percentage	10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23236]	ammonium ChEBI	+	nitrogen source
[Ref.: #23236]	ethanol ChEBI	+	carbon source
[Ref.: #23236]	glycerol ChEBI	+	carbon source
[Ref.: #23236]	maltose ChEBI	-	carbon source
[Ref.: #23236]	methanol ChEBI	-	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #23236]		2-dehydro-D-gluconate ChEBI	yes
[Ref.: #23236]		5-dehydro-D-gluconate ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23236]		catalase	+	1.11.1.6
[Ref.: #23236]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7760]	Sample type/isolated from	mango fruit Mangifera indica L.
[Ref.: #7760]	Host species	Mangifera indica
[Ref.: #7760]	Geographic location (country and/or sea, region)	Casamance
[Ref.: #7760]	Country	Senegal
[Ref.: #7760]	Country ISO 3 Code	SEN
[Ref.: #7760]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Plant

#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM748710 (>99% sequence identity) for Acetobacter tropicalis from Microbeatlas

Aquatic Samples	25
Soil Samples	101
Animal Samples	218
Plant Samples	77
Total Samples	421

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7760]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7760]	Acetobacter senegalensis strain CWBI-B418 16S ribosomal RNA gene, partial sequence	AY883036	1386	GenBank ENA	446692 tax ID
[Ref.: #20218]	Acetobacter senegalensis partial 16S rRNA gene, type strain LMG 23690T	AM748710	1444	GenBank ENA	446692 tax ID	*
[Ref.: #20218]	Acetobacter senegalensis partial 16S rRNA gene, strain LMG 23690	HG424424	1444	GenBank ENA	446692 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acetobacter senegalensis LMG 23690	GCA_001580995	contig	GenBank ENA	446692 tax ID	*
[Ref.: #66792]	Acetobacter senegalensis strain LMG 23690	446692.4	wgs	PATRIC	446692 tax ID	*
[Ref.: #66792]	Acetobacter senegalensis LMG 23690	2728368907	draft	JGI IMG/M	446692 tax ID	*

[Ref.: #7760]	GC-content	56.0 mol%
[Ref.: #23236]	GC-content	56.00 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acetobacter senegalensis strain LMG 23690 PATRIC: 446692.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.286	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.816	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.043	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.471	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	69.863	no

Availability in culture collections External links

[Ref.: #7760]

Culture collection no.

DSM 18889, LMG 23690

[Ref.: #69705]

SI-ID 138992

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acetobacter garciniae sp. nov., an acetic acid bacterium isolated from fermented mangosteen peel in Thailand.	Yukphan P, Charoenyingcharoen P, Kingcha Y, Likhitrattanapisal S, Muangham S, Tanasupawat S, Yamada Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005052	2021	*
Proteome	Effect of Sequential Acclimation to Various Carbon Sources on the Proteome of Acetobacter senegalensis LMG 23690(T) and Its Tolerance to Downstream Process Stresses.	Shafiei R, Leprince P, Sombolestani AS, Thonart P, Delvigne F	Front Microbiol	10.3389/fmicb.2019.00608	2019	*
Phylogeny	Acetobacter senegalensis sp. nov., a thermotolerant acetic acid bacterium isolated in Senegal (sub-Saharan Africa) from mango fruit (Mangifera indica L.).	Ndoye B, Cleenwerck I, Engelbeen K, Dubois-Dauphin R, Guiro AT, Van Trappen S, Willems A, Thonart P	Int J Syst Evol Microbiol	10.1099/ijs.0.64678-0	2007	*

References

#7760

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18889

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23236

Bassirou Ndoye, Ilse Cleenwerck, Katrien Engelbeen, Robin Dubois-Dauphin, Amadou Tidiane Guiro, Stefanie Van Trappen, Anne Willems, Phillipe Thonart: Acetobacter senegalensis sp. nov., a thermotolerant acetic acid bacterium isolated in Senegal (sub-Saharan Africa) from mango fruit (Mangifera indica L.). IJSEM 57: 1576 - 1581 2007 ( DOI 10.1099/ijs.0.64678-0 , PubMed 17625197 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69705

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138992.1 )

* These data were automatically processed and therefore are not curated

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Acetobacter senegalensis strain LMG 23690

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