Ralstonia solanacearum 60-1 is an aerobe, mesophilic plant pathogen that was isolated from Lycopersicon esculentum.
aerobe mesophilic plant pathogen genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Burkholderiaceae |
| Genus Ralstonia |
| Species Ralstonia solanacearum |
| Full scientific name Ralstonia solanacearum (Smith 1896) Yabuuchi et al. 1996 |
| Synonyms (3) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125439 | negative | 95.6 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3633 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 46075 | Oxygen toleranceaerobe |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 97.4 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | + | hydrolysis | from API 20NE |
Global distribution of 16S sequence EF016361 (>99% sequence identity) for Ralstonia from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM225169v1 assembly for Ralstonia solanacearum K60 | contig | 1091042 | 76.31 | ||||
| 66792 | ASM1591070v1 assembly for Ralstonia solanacearum NCPPB 325 | contig | 305 | 72.19 | ||||
| 124043 | ASM4268566v1 assembly for Ralstonia solanacearum ICMP 5712 | contig | 305 | 69.63 | ||||
| 124043 | ASM4264820v1 assembly for Ralstonia solanacearum ICMP 5712 | scaffold | 305 | 67.55 | ||||
| 124043 | ASM4243206v1 assembly for Ralstonia solanacearum ICMP 5712 | scaffold | 305 | 31.08 | ||||
| 124043 | ASM4268404v1 assembly for Ralstonia solanacearum ICMP 5712 | contig | 305 | 25.89 | ||||
| 66792 | ASM28581v1 assembly for Ralstonia solanacearum K60 | contig | 1091042 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Ralstonia solanacearum gene for 16S ribosomal RNA, 23S ribosomal RNA, partial sequence | D87086 | 554 | 1091042 | ||
| 20218 | P.solanacearum (ATCC 11696) 16S ribosomal RNA | X67036 | 1470 | 1091042 | ||
| 20218 | Ralstonia solanacearum strain LMG2299 16S-23S ribosomal RNA intergenic spacer, partial sequence | KC756967 | 501 | 305 | ||
| 3633 | Ralstonia solanacearum strain LMG 2299 external transcribed spacer and 16S ribosomal RNA gene, partial sequence | EF016361 | 1497 | 1091042 | ||
| 124043 | 'Crotalaria juncea' shoot proliferation phytoplasma isolate CrSP-Br 01 16S ribosomal RNA gene, partial sequence. | KC756966 | 501 | 305 | ||
| 124043 | 'Crotalaria juncea' shoot proliferation phytoplasma isolate CrSP-Br 01 16S ribosomal RNA gene, partial sequence. | KC756968 | 501 | 305 | ||
| 124043 | 'Crotalaria juncea' shoot proliferation phytoplasma isolate CrSP-Br 01 16S ribosomal RNA gene, partial sequence. | KC756969 | 501 | 305 | ||
| 124043 | 'Crotalaria juncea' shoot proliferation phytoplasma isolate CrSP-Br 01 16S ribosomal RNA gene, partial sequence. | KC756970 | 501 | 305 | ||
| 124043 | Burkholderia solanacearum strain PDDCC1727 16S ribosomal RNA gene, partial sequence. | U28221 | 1441 | 1091042 | ||
| 124043 | Ralstonia solanacearum strain ICMP 5712 16S ribosomal RNA gene, partial sequence. | MT759971 | 1356 | 305 | ||
| 124043 | Ralstonia solanacearum strain ICMP 5712 16S ribosomal RNA gene, partial sequence. | MT758041 | 1359 | 305 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 3633 | 66.6 | high performance liquid chromatography (HPLC) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Biological Activities of Two Major Copaiba Diterpenoids and Their Semi-synthetic Derivatives. | Cicek SS, Wenzel-Storjohann A, Girreser U, Tasdemir D. | Rev Bras Farmacogn | 10.1007/s43450-020-00002-y | 2020 | ||
| Metabolism | Design of Fungal Co-Cultivation Based on Comparative Metabolomics and Bioactivity for Discovery of Marine Fungal Agrochemicals. | Oppong-Danquah E, Budnicka P, Blumel M, Tasdemir D. | Mar Drugs | 10.3390/md18020073 | 2020 | |
| Actinobacteria From Desert: Diversity and Biotechnological Applications. | Xie F, Pathom-Aree W. | Front Microbiol | 10.3389/fmicb.2021.765531 | 2021 | ||
| Metabolism | Genomics- and Metabolomics-Based Investigation of the Deep-Sea Sediment-Derived Yeast, Rhodotorula mucilaginosa 50-3-19/20B. | Buedenbender L, Kumar A, Blumel M, Kempken F, Tasdemir D. | Mar Drugs | 10.3390/md19010014 | 2020 | |
| Champacyclin, a new cyclic octapeptide from Streptomyces strain C42 isolated from the Baltic Sea. | Pesic A, Baumann HI, Kleinschmidt K, Ensle P, Wiese J, Sussmuth RD, Imhoff JF. | Mar Drugs | 10.3390/md11124834 | 2013 | ||
| Molecular Networking-Based Metabolome and Bioactivity Analyses of Marine-Adapted Fungi Co-cultivated With Phytopathogens. | Oppong-Danquah E, Parrot D, Blumel M, Labes A, Tasdemir D. | Front Microbiol | 10.3389/fmicb.2018.02072 | 2018 | ||
| Enzymology | Levantilides A and B, 20-membered macrolides from a Micromonospora strain isolated from the Mediterranean deep sea sediment. | Gartner A, Ohlendorf B, Schulz D, Zinecker H, Wiese J, Imhoff JF. | Mar Drugs | 10.3390/md9010098 | 2011 | |
| Phylogeny | Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panicea. | Schneemann I, Nagel K, Kajahn I, Labes A, Wiese J, Imhoff JF. | Appl Environ Microbiol | 10.1128/aem.00780-10 | 2010 | |
| Comparative Evaluation of LAMP, qPCR, Conventional PCR, and ELISA to Detect Ralstonia solanacearum in Kenyan Potato Fields. | Okiro LA, Tancos MA, Nyanjom SG, Smart CD, Parker ML. | Plant Dis | 10.1094/pdis-03-18-0489-re | 2019 | ||
| HS-SPME/GC×GC-TOFMS-Based Flavoromics and Antimicrobial Properties of the Aroma Components of Zanthoxylum motuoense. | Gu W, Wei Y, Fu X, Gu R, Chen J, Jian J, Huang L, Yuan C, Guan W, Hao X. | Foods | 10.3390/foods12112225 | 2023 | ||
| Lophiostomin A-D: new 3,4-dihydroisocoumarin derivatives from the endophytic fungus Lophiostoma sp. Sigrf10. | Mao Z, Xue M, Gu G, Wang W, Li D, Lai D, Zhou L. | RSC Adv | 10.1039/d0ra00538j | 2020 | ||
| Genetics | Sequencing of K60, type strain of the major plant pathogen Ralstonia solanacearum. | Remenant B, Babujee L, Lajus A, Medigue C, Prior P, Allen C. | J Bacteriol | 10.1128/jb.00249-12 | 2012 | |
| Fungal Endophytes: A Potential Source of Antibacterial Compounds. | Deshmukh SK, Dufosse L, Chhipa H, Saxena S, Mahajan GB, Gupta MK. | J Fungi (Basel) | 10.3390/jof8020164 | 2022 | ||
| Chemical Composition, Algicidal, Antimicrobial, and Antioxidant Activities of the Essential Oils of Taiwania flousiana Gaussen. | Liu H, Huang J, Yang S, Li J, Zhou L. | Molecules | 10.3390/molecules25040967 | 2020 | ||
| Metabolism | Targeting microbial pathogens by expression of new recombinant dermaseptin peptides in tobacco. | Khademi M, Nazarian-Firouzabadi F, Ismaili A, Shirzadian Khorramabad R. | Microbiologyopen | 10.1002/mbo3.837 | 2019 | |
| Pathogenicity | Bromopyrrole Alkaloids with the Inhibitory Effects against the Biofilm Formation of Gram Negative Bacteria. | Sun J, Wu J, An B, Voogd NJ, Cheng W, Lin W. | Mar Drugs | 10.3390/md16010009 | 2018 | |
| Enzymology | New polyphenols from a deep sea Spiromastix sp. Fungus, and their antibacterial activities. | Niu S, Liu D, Proksch P, Shao Z, Lin W. | Mar Drugs | 10.3390/md13042526 | 2015 | |
| Benzopyranones from the endophytic fungus Hyalodendriella sp. Ponipodef12 and their bioactivities. | Meng X, Mao Z, Lou J, Xu L, Zhong L, Peng Y, Zhou L, Wang M. | Molecules | 10.3390/molecules171011303 | 2012 | ||
| Metabolism | Ralstonia solanacearum iron scavenging by the siderophore staphyloferrin B is controlled by PhcA, the global virulence regulator. | Bhatt G, Denny TP. | J Bacteriol | 10.1128/jb.186.23.7896-7904.2004 | 2004 | |
| Enzymology | Alternariol 9-methyl ether from the endophytic fungus Alternaria sp. Samif01 and its bioactivities. | Lou J, Yu R, Wang X, Mao Z, Fu L, Liu Y, Zhou L. | Braz J Microbiol | 10.1016/j.bjm.2015.11.004 | 2016 | |
| Pathogenicity | Antimicrobial and antioxidant activities and effect of 1-hexadecene addition on palmarumycin C2 and C3 yields in liquid culture of endophytic fungus Berkleasmium sp. Dzf12. | Mou Y, Meng J, Fu X, Wang X, Tian J, Wang M, Peng Y, Zhou L. | Molecules | 10.3390/molecules181215587 | 2013 | |
| Anti-Planktonic and Anti-Biofilm Properties of Pentacyclic Triterpenes-Asiatic Acid and Ursolic Acid as Promising Antibacterial Future Pharmaceuticals. | Sycz Z, Tichaczek-Goska D, Wojnicz D. | Biomolecules | 10.3390/biom12010098 | 2022 | ||
| Antifungal Peptides as Therapeutic Agents. | Fernandez de Ullivarri M, Arbulu S, Garcia-Gutierrez E, Cotter PD. | Front Cell Infect Microbiol | 10.3389/fcimb.2020.00105 | 2020 | ||
| Enzymology | Diterpenoid tanshinones and phenolic acids from cultured hairy roots of Salvia miltiorrhiza Bunge and their antimicrobial activities. | Zhao J, Lou J, Mou Y, Li P, Wu J, Zhou L. | Molecules | 10.3390/molecules16032259 | 2011 | |
| Metabolism | Enhanced reliability and accuracy for field deployable bioforensic detection and discrimination of Xylella fastidiosa subsp. pauca, causal agent of citrus variegated chlorosis using razor ex technology and TaqMan quantitative PCR. | Ouyang P, Arif M, Fletcher J, Melcher U, Ochoa Corona FM. | PLoS One | 10.1371/journal.pone.0081647 | 2013 | |
| Synergistic Effect between Cryptotanshinone and Antibiotics against Clinic Methicillin and Vancomycin-Resistant Staphylococcus aureus. | Cha JD, Lee JH, Choi KM, Choi SM, Park JH. | Evid Based Complement Alternat Med | 10.1155/2014/450572 | 2014 | ||
| Antimicrobial metabolites from the endophytic fungus Pichia guilliermondii isolated from Paris polyphylla var. yunnanensis. | Zhao J, Mou Y, Shan T, Li Y, Zhou L, Wang M, Wang J. | Molecules | 10.3390/molecules15117961 | 2010 | ||
| Phylogeny | Species-specific PCR as a tool for the identification of Burkholderia gladioli. | Whitby PW, Pope LC, Carter KB, LiPuma JJ, Stull TL. | J Clin Microbiol | 10.1128/jcm.38.1.282-285.2000 | 2000 | |
| Enzymology | Identification and detection of Stenotrophomonas maltophilia by rRNA-directed PCR. | Whitby PW, Carter KB, Burns JL, Royall JA, LiPuma JJ, Stull TL. | J Clin Microbiol | 10.1128/jcm.38.12.4305-4309.2000 | 2000 | |
| Validation and Application of a Real-time PCR Protocol for the Specific Detection and Quantification of Clavibacter michiganensis subsp. sepedonicus in Potato. | Cho MS, Park DH, Namgung M, Ahn TY, Park DS. | Plant Pathol J | 10.5423/ppj.oa.02.2015.0019 | 2015 | ||
| Phylogeny | Estimating Divergence Times and Substitution Rates in Rhizobia. | Chriki-Adeeb R, Chriki A. | Evol Bioinform Online | 10.4137/ebo.s39070 | 2016 | |
| Phylogeny | Identification of Xanthomonas fragariae, Xanthomonas axonopodis pv. phaseoli, and Xanthomonas fuscans subsp. fuscans with novel markers and using a dot blot platform coupled with automatic data analysis. | Albuquerque P, Caridade CM, Marcal AR, Cruz J, Cruz L, Santos CL, Mendes MV, Tavares F. | Appl Environ Microbiol | 10.1128/aem.05189-11 | 2011 | |
| Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans. | Kost T, Stopnisek N, Agnoli K, Eberl L, Weisskopf L. | Front Microbiol | 10.3389/fmicb.2013.00421 | 2014 | ||
| Enzymology | Low rates of Pseudomonas aeruginosa misidentification in isolates from cystic fibrosis patients. | Kidd TJ, Ramsay KA, Hu H, Bye PT, Elkins MR, Grimwood K, Harbour C, Marks GB, Nissen MD, Robinson PJ, Rose BR, Sloots TP, Wainwright CE, Bell SC, ACPinCF Investigators. | J Clin Microbiol | 10.1128/jcm.00014-09 | 2009 | |
| Transcriptome | Quantitative detection of the Ralstonia solanacearum species complex in soil by qPCR combined with a recombinant internal control strain. | Chen W, Zhang J-W, Qin B-X, Xie H-T, Zhang Z, Qiao X-Z, Li S-K, Asif M, Guo S, Cui L-X, Wang P-P, Dong L-H, Guo Q-G, Jiang W-J, Ma P, Xia Z-Y, Lu C-H, Zhang L-Q. | Microbiol Spectr | 10.1128/spectrum.00210-23 | 2023 | |
| Pathogenicity | Biocontrol of the Major Plant Pathogen Ralstonia solanacearum in Irrigation Water and Host Plants by Novel Waterborne Lytic Bacteriophages. | Alvarez B, Lopez MM, Biosca EG. | Front Microbiol | 10.3389/fmicb.2019.02813 | 2019 | |
| Assessing the Pathogenic Ability of Ralstonia pseudosolanacearum (Ralstonia solanacearum Phylotype I) from Ornamental Rosa spp. Plants. | Tjou-Tam-Sin NNA, van de Bilt JLJ, Westenberg M, Gorkink-Smits PPMA, Landman NM, Bergsma-Vlami M. | Front Plant Sci | 10.3389/fpls.2017.01895 | 2017 | ||
| Enzymology | Detection of Ralstonia solanacearum, which causes brown rot of potato, by fluorescent in situ hybridization with 23S rRNA-targeted probes. | Wullings BA, Van Beuningen AR, Janse JD, Akkermans AD. | Appl Environ Microbiol | 10.1128/aem.64.11.4546-4554.1998 | 1998 | |
| Metabolism | Preventing Ralstonia solanacearum adhesion with glycans from cashew, cocoa, coffee, pumpkin, and tomato seed extract. | Rachmaninov O, Zinger-Yosovich KD, Gilboa-Garber N | Can J Microbiol | 10.1139/w2012-062 | 2012 | |
| Phylogeny | Proposal to classify Ralstonia solanacearum phylotype I strains as Ralstonia nicotianae sp. nov., and a genomic comparison between members of the genus Ralstonia. | Liu JY, Zhang JF, Wu HL, Chen Z, Li SY, Li HM, Zhang CP, Zhou YQ, Lu CH. | Front Microbiol | 10.3389/fmicb.2023.1135872 | 2023 |
| #3633 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9544 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #46075 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14272 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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