Polynucleobacter yangtzensis MWH-JaK3 | Type strain | DSM 21493, CIP 110976

Culture medium

NSY

Culture medium growth

Culture medium

Nutrient Broth

Culture medium growth

Culture medium

Peptone

Culture medium growth

Culture medium

R2A medium

Culture medium growth

Culture medium

Soytone

Culture medium growth

Culture medium

Standard agar

Culture medium growth

Culture medium

Tryptic Soy Media

Culture medium growth

Culture medium

Yeast extract

Culture medium growth

Culture medium

R2A MEDIUM (DSMZ Medium 830)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

expand / minimize

Culture medium

CIP Medium 566

Culture medium growth

Medium recipe provided by DSMZ

Culture medium link

		Temperature
[Ref.: #15744]	growth	28 °C
[Ref.: #42053]	growth	25 °C
[Ref.: #43586]	growth	35 °C

[Ref.: #15744]	Temperature range	mesophilic
[Ref.: #42053]	Temperature range	mesophilic
[Ref.: #43586]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

facultative anaerobe

What are isolation sources categories?

Nutrition type

chemoorganotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43586]		NaCl		growth	0-0.3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43586]	4-oxopentanoate ChEBI	-	assimilation
[Ref.: #43586]	acetate ChEBI	+	assimilation
[Ref.: #43586]	citrate ChEBI	-	assimilation
[Ref.: #43586]	D-galactose ChEBI	-	assimilation
[Ref.: #43586]	D-glucose ChEBI	-	assimilation
[Ref.: #43586]	D-mannose ChEBI	-	assimilation
[Ref.: #43586]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43586]	fumarate ChEBI	+	assimilation
[Ref.: #43586]	glycolate ChEBI	-	assimilation
[Ref.: #43586]	glyoxylate ChEBI	-	assimilation
[Ref.: #43586]	L-alanine ChEBI	-	assimilation
[Ref.: #43586]	L-asparagine ChEBI	-	assimilation
[Ref.: #43586]	L-aspartate ChEBI	-	assimilation
[Ref.: #43586]	L-cysteine ChEBI	+	assimilation
[Ref.: #43586]	L-glutamate ChEBI	-	assimilation
[Ref.: #43586]	L-serine ChEBI	-	assimilation
[Ref.: #43586]	malate ChEBI	+	assimilation
[Ref.: #43586]	oxalate ChEBI	-	assimilation
[Ref.: #43586]	oxaloacetate ChEBI	+	assimilation
[Ref.: #43586]	propionate ChEBI	+	assimilation
[Ref.: #43586]	pyruvate ChEBI	+	assimilation
[Ref.: #43586]	succinate ChEBI	+	assimilation
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Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15744]	Sample type/isolated from	polluted river water
[Ref.: #15744]	Geographic location (country and/or sea, region)	Yangtze River
[Ref.: #15744]	Country	China
[Ref.: #15744]	Country ISO 3 Code	CHN
[Ref.: #15744]	Continent	Asia
[Ref.: #15744]	Geographic location	32.1144°/118.7320°

[Ref.: #124010]	Geographic location (country and/or sea, region)	Yangtze River near Nanjing
[Ref.: #124010]	Country	China
[Ref.: #124010]	Country ISO 3 Code	CHN
[Ref.: #124010]	Continent	Asia
[Ref.: #124010]	Isolation date	2002-11-16
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Aquatic	#River (Creek)

[Ref.: #69479]

Global distribution of 16S sequence AJ550657 (>99% sequence identity) for Polynucleobacter from Microbeatlas

Aquatic Samples	34169
Soil Samples	1815
Animal Samples	6310
Plant Samples	555
Total Samples	42849

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15744]	Polynucleobacter necessarius subsp. asymbioticus partial 16S rRNA gene and ITS1, isolate MWH-JaK3	AJ550657	2014	ENA	1743159 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Polynucleobacter yangtzensis MWH-JaK3	GCA_001595965	scaffold	GenBank	1743159 tax ID	*
[Ref.: #66792]	Polynucleobacter yangtzensis MWH-JaK3	2608642177	complete	JGI IMG/M	1743159 tax ID	*

[Ref.: #15744]	GC-content	45.5 mol%	sequence analysis
[Ref.: #43586]	GC-content	45.4 mol%

Availability in culture collections External links