Name: Arcanobacterium canis P6775
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 204

Type strain:

Species: Arcanobacterium canis

Strain Designation: P6775

Culture col. no.: DSM 25104, CCM 7958, CCUG 61573, CIP 110339

Strain history: CIP <- 2011, P. Kämpfer, Giessen Univ., Giessen, Germany: strain P6775

NCBI tax ID(s): 999183 (species)

SI-ID 381143

CCM 7958, CCUG 61573, CIP 110339, DSM 25104

Special Collections

Section

When using BacDive for research please cite our paper

Arcanobacterium canis P6775 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from canine otitis externa.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Arcanobacterium*
	Species	**Arcanobacterium canis**
	Full Scientific Name (LPSN)	Arcanobacterium canis Hijazin et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #22974]	Gram stain	positive
[Ref.: #117134]	Gram stain	positive

[Ref.: #22974]	Cell length	1.0-2.0 µm

[Ref.: #22974]	Cell width	0.5 µm

[Ref.: #22974]	Cell shape	rod-shaped
[Ref.: #117134]	Cell shape	rod-shaped

[Ref.: #22974]	Motility	no
[Ref.: #117134]	Motility	no
[Ref.: #125439]	Motility	no Confidence in %90.6

[Ref.: #62657]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37594]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #37594]

Culture medium growth

[Ref.: #37594]

Culture medium composition

expand / minimize

[Ref.: #17844]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #17844]

Culture medium growth

[Ref.: #17844]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17844]

Culture medium composition

expand / minimize

[Ref.: #17844]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #17844]

Culture medium growth

[Ref.: #17844]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17844]

Culture medium composition

expand / minimize

[Ref.: #117134]

Culture medium

CIP Medium 45

[Ref.: #117134]

Culture medium growth

[Ref.: #117134]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17844]	growth	37 °C
[Ref.: #37594]	growth	37 °C
[Ref.: #62657]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17844]	Oxygen tolerance	anaerobe
[Ref.: #62657]	Oxygen tolerance	microaerophile
[Ref.: #117134]	Oxygen tolerance	microaerophile

[Ref.: #22974]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %98.5
[Ref.: #125438]	Ability of spore formation	no Confidence in %98.44

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #22974]	D-glucose ChEBI	+	builds acid from
[Ref.: #22974]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #22974]	D-ribose ChEBI	+	builds acid from
[Ref.: #22974]	D-xylose ChEBI	-	builds acid from
[Ref.: #22974]	glycogen ChEBI	+	builds acid from
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #22974]	lactose ChEBI	+	builds acid from
[Ref.: #22974]	maltose ChEBI	+	builds acid from
[Ref.: #117134]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #117134]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #22974]	sucrose ChEBI	+	builds acid from
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #117134]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #22974]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A, API zym
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym, API rID32A
[Ref.: #22974]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API rID32A
[Ref.: #22974]	alpha-mannosidase	+	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #22974]	amylase	+
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #22974]	beta-galactosidase	+	3.2.1.23
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32A
[Ref.: #22974]	beta-glucuronidase	+	3.2.1.31
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A, API zym
[Ref.: #22974]	caseinase	-	3.4.21.50
[Ref.: #22974]	catalase	-	1.11.1.6
[Ref.: #117134]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #22974]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #22974]	gelatinase	-
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #22974]	hyaluronate lyase	-	4.2.2.1
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #22974]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #22974]	nitrate reductase	-	1.7.99.4
[Ref.: #117134]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #22974]	pyrazinamidase	-	3.5.1.B15
[Ref.: #22974]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #22974]	urease	-	3.5.1.5
[Ref.: #117134]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #17844]	14139	-	-	+	+	+	+	-	-	-	+	+	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117134]	12530	-	+	+	+	-	+	-	-	+	-	+	+	+	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17844]	Sample type/isolated from	canine otitis externa
[Ref.: #17844]	Geographic location (country and/or sea, region)	Hessen, Giessen
[Ref.: #17844]	Country	Germany
[Ref.: #17844]	Country ISO 3 Code	DEU
[Ref.: #17844]	Continent	Europe

[Ref.: #62657]	Sample type/isolated from	Canine,otitis externa
[Ref.: #62657]	Sampling date	2011
[Ref.: #62657]	Geographic location (country and/or sea, region)	Giessen/Hessen
[Ref.: #62657]	Country	Germany
[Ref.: #62657]	Country ISO 3 Code	DEU
[Ref.: #62657]	Continent	Europe

[Ref.: #117134]	Sample type/isolated from	Animal, Canine otidis externa
[Ref.: #117134]	Geographic location (country and/or sea, region)	Giessen, Hessen
[Ref.: #117134]	Country	Germany
[Ref.: #117134]	Country ISO 3 Code	DEU
[Ref.: #117134]	Continent	Europe
[Ref.: #117134]	Isolation date	2011
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Organ	#Ear

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR846134 (>99% sequence identity) for Arcanobacterium canis from Microbeatlas

Aquatic Samples	10
Soil Samples	7
Animal Samples	584
Plant Samples
Total Samples	601

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17844]	Pathogenicity (animal)	yes, in single cases
[Ref.: #17844]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117134]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17844]	Arcanobacterium canis partial 16S rRNA gene, type strain DSM 25104T	FR846134	1363	GenBank ENA	999183 tax ID
[Ref.: #124043]	Arcanobacterium canis strain DSM 25104 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	OP620761	523	GenBank ENA	999183 tax ID	*
[Ref.: #20218]	Arcanobacterium canis genomic DNA containing 16S rDNA-23S rDNA IGS, strain CIP 110339, isolate P6775-11	HE616814	345	GenBank ENA	999183 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arcanobacterium canis DSM 25104	GCA_029625435	complete	GenBank ENA	999183 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arcanobacterium canis DSM 25104 NCBI: GCA_029625435.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	60.16	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	69.155	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	80.615	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	98.44	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.636	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	87.895	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arcanobacterium canis DSM 25104 NCBI: GCA_029625435
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	90.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	77
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	88.7

Availability in culture collections External links

[Ref.: #17844]

Culture collection no.

DSM 25104, CCM 7958, CCUG 61573, CIP 110339

[Ref.: #69887]

SI-ID 381143

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Further characteristics of Arcanobacterium canis, a novel species of genus Arcanobacterium.	Sammra O, Balbutskaya A, Zhang S, Hijazin M, Nagib S, Lammler C, Abdulmawjood A, Prenger-Berninghoff E, Kostrzewa M, Timke M	Vet Microbiol	10.1016/j.vetmic.2013.09.017	2013	*
Phylogeny	Arcanobacterium canis sp. nov., isolated from otitis externa of a dog, and emended description of the genus Arcanobacterium Collins et al. 1983 emend. Yassin et al. 2011.	Hijazin M, Prenger-Berninghoff E, Sammra O, Alber J, Lammler C, Kampfer P, Glaeser SP, Busse HJ, Hassan AA, Abdulmawjood A, Zschock M	Int J Syst Evol Microbiol	10.1099/ijs.0.037150-0	2011	*

References

#17844

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25104

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22974

Muaz Hijazin,Ellen Prenger-Berninghoff,Osama Sammra,Jörg Alber,Christoph Lämmler,Peter Kämpfer,Stefanie P. Glaeser,Hans-Jürgen Busse,Abdulwahed Ahmed Hassan,Amir Abdulmawjood,Michael Zschöck: Arcanobacterium canis sp. nov., isolated from otitis externa of a dog, and emended description of the genus Arcanobacterium Collins et al. 1983 emend. Yassin et al. 2011. IJSEM 62: 2201 - 2205 2012 ( DOI 10.1099/ijs.0.037150-0 , PubMed 22081713 )

#37594 ; Curators of the CIP;
#62657 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61573

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69887

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381143.1 )

#117134 Collection of Institut Pasteur ; Curators of the CIP; CIP 110339

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Arcanobacterium canis DSM 25104

Arcanobacterium canis DSM 25104

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