Cupriavidus metallidurans CH34 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from decantation tank of zink factory.
Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Burkholderiaceae |
| Genus Cupriavidus |
| Species Cupriavidus metallidurans |
| Full scientific name Cupriavidus metallidurans (Goris et al. 2001) Vandamme and Coenye 2004 |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 1235 | MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) | Medium recipe at MediaDive | Name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) Composition: Agar 20.1005 g/l Na2HPO4 x 2 H2O 2.91457 g/l KH2PO4 2.31156 g/l NH4Cl 1.00503 g/l MgSO4 x 7 H2O 0.502512 g/l Ferric ammonium citrate 0.0502513 g/l CaCl2 x 2 H2O 0.0100503 g/l NaVO3 x H2O 0.00502512 g/l Calcium pantothenate 0.00251256 g/l Pyridoxine hydrochloride 0.00251256 g/l Nicotinic acid 0.00251256 g/l Thiamine-HCl x 2 H2O 0.00251256 g/l H3BO3 0.00150754 g/l CoCl2 x 6 H2O 0.00100503 g/l Riboflavin 0.000502513 g/l ZnSO4 x 7 H2O 0.000502513 g/l MnCl2 x 4 H2O 0.000150754 g/l Na2MoO4 x 2 H2O 0.000150754 g/l NiCl2 x 6 H2O 0.000100503 g/l CuCl2 x 2 H2O 5.02513e-05 g/l Vitamin B12 5.02513e-05 g/l Folic acid 1.00503e-05 g/l Biotin 5.02513e-06 g/l Distilled water | ||
| 1235 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 40692 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 120919 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 98.4 |
| @ref | Metabolite | Is antibiotic | Is sensitive | Is resistant | |
|---|---|---|---|---|---|
| 120919 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 120919 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 120919 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 120919 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120919 | caseinase | - | 3.4.21.50 | |
| 120919 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 120919 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120919 | gelatinase | - | ||
| 120919 | lecithinase | - | ||
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 120919 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 120919 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 120919 | ornithine decarboxylase | + | 4.1.1.17 | |
| 120919 | oxidase | + | ||
| 120919 | protease | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 120919 | tryptophan deaminase | - | ||
| 120919 | tween esterase | + | ||
| 120919 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM19601v1 assembly for Cupriavidus metallidurans CH34 | complete | 266264 | 96.61 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Ralstonia sp. CH34 16S rRNA gene, strain CH34 | Y10824 | 1493 | 266264 | ||
| 20218 | Cupriavidus metallidurans strain CIP 107179 16S ribosomal RNA gene, partial sequence | EU024161 | 1315 | 119219 | ||
| 20218 | Cupriavidus metallidurans gene for 16S ribosomal RNA, strain: DSM 2839 | D87999 | 1462 | 119219 | ||
| 20218 | Cupriavidus metallidurans gene for 16S rRNA, partial sequence, strain: NBRC 102507 | AB681841 | 1457 | 119219 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 80.80 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.96 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 75.42 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 89.01 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 82.84 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Surface Display of Multiple Metal-Binding Domains in Deinococcus radiodurans Alleviates Cadmium and Lead Toxicity in Rice. | Wang L, Wang Y, Dai S, Wang B. | Int J Mol Sci | 10.3390/ijms252312570 | 2024 | |
| Synthetic Biology Toolbox, Including a Single-Plasmid CRISPR-Cas9 System to Biologically Engineer the Electrogenic, Metal-Resistant Bacterium Cupriavidus metallidurans CH34. | Turco F, Garavaglia M, Van Houdt R, Hill P, Rawson FJ, Kovacs K. | ACS Synth Biol | 10.1021/acssynbio.2c00130 | 2022 | |
| Machine learning-based identification of key biotic and abiotic drivers of mineral weathering rate in a complex enhanced weathering experiment. | Janssens I, Servotte T, Calogiuri T, Mortier S, Niron H, Corbett T, Poetra RP, Rieder L, Van Tendeloo M, Singh A, Latre S, Vlaminck SE, Hartmann J, van Groenigen JW, Neubeck A, Vidal A, Janssens IA, Hagens M, Vicca S, Verdonck T. | Open Res Eur | 10.12688/openreseurope.19252.3 | 2025 | |
| Microbially-Enhanced Vanadium Mining and Bioremediation Under Micro- and Mars Gravity on the International Space Station. | Cockell CS, Santomartino R, Finster K, Waajen AC, Nicholson N, Loudon CM, Eades LJ, Moeller R, Rettberg P, Fuchs FM, Van Houdt R, Leys N, Coninx I, Hatton J, Parmitano L, Krause J, Koehler A, Caplin N, Zuijderduijn L, Mariani A, Pellari S, Carubia F, Luciani G, Balsamo M, Zolesi V, Ochoa J, Sen P, Watt JAJ, Doswald-Winkler J, Herova M, Rattenbacher B, Wadsworth J, Everroad RC, Demets R. | Front Microbiol | 10.3389/fmicb.2021.641387 | 2021 | |
| Space station biomining experiment demonstrates rare earth element extraction in microgravity and Mars gravity. | Cockell CS, Santomartino R, Finster K, Waajen AC, Eades LJ, Moeller R, Rettberg P, Fuchs FM, Van Houdt R, Leys N, Coninx I, Hatton J, Parmitano L, Krause J, Koehler A, Caplin N, Zuijderduijn L, Mariani A, Pellari SS, Carubia F, Luciani G, Balsamo M, Zolesi V, Nicholson N, Loudon CM, Doswald-Winkler J, Herova M, Rattenbacher B, Wadsworth J, Craig Everroad R, Demets R. | Nat Commun | 10.1038/s41467-020-19276-w | 2020 | |
| Structural characterization of the bacterial proteasome homolog BPH reveals a tetradecameric double-ring complex with unique inner cavity properties. | Fuchs ACD, Maldoner L, Hipp K, Hartmann MD, Martin J. | J Biol Chem | 10.1074/jbc.m117.815258 | 2018 | |
| Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat. | Perazzolli M, Herrero N, Sterck L, Lenzi L, Pellegrini A, Puopolo G, Van de Peer Y, Pertot I. | BMC Genomics | 10.1186/s12864-016-3174-4 | 2016 | |
| The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living polynucleobacter population. | Hahn MW, Scheuerl T, Jezberova J, Koll U, Jezbera J, Simek K, Vannini C, Petroni G, Wu QL. | PLoS One | 10.1371/journal.pone.0032772 | 2012 | |
| The Impacts of Microgravity on Bacterial Metabolism. | Sharma G, Curtis PD. | Life (Basel) | 10.3390/life12060774 | 2022 | |
| Effects of spaceflight and simulated microgravity on microbial growth and secondary metabolism. | Huang B, Li DG, Huang Y, Liu CT. | Mil Med Res | 10.1186/s40779-018-0162-9 | 2018 | |
| Mycotoxin Biodegradation Ability of the Cupriavidus Genus. | Al-Nussairawi M, Risa A, Garai E, Varga E, Szabo I, Csenki-Bakos Z, Kriszt B, Cserhati M. | Curr Microbiol | 10.1007/s00284-020-02063-7 | 2020 | |
| Molecular self-assembly mediates the flocculation activity of benzimidazole derivatives against E. coli. | Drewek I, Pietka A, Tran TQ, Blazhynska M, Jenistova A, Chipot C, Barth A, Surin M, Leclere P, Wattiez R, Muller RN, Stanicki D, Laurent S. | Sci Rep | 10.1038/s41598-025-13837-z | 2025 | |
| The effect of bacterial growth strategies on plasmid transfer and naphthalene degradation for bioremediation. | Varner PM, Allemann MN, Michener JK, Gunsch CK. | Environ Technol Innov | 10.1016/j.eti.2022.102910 | 2022 | |
| First case of invasive human infection caused by Cupriavidus metallidurans. | Langevin S, Vincelette J, Bekal S, Gaudreau C. | J Clin Microbiol | 10.1128/jcm.01947-10 | 2011 | |
| Genomic Insights Into Cadmium Resistance of a Newly Isolated, Plasmid-Free Cellulomonas sp. Strain Y8. | Chen J, Wang L, Li W, Zheng X, Li X. | Front Microbiol | 10.3389/fmicb.2021.784575 | 2021 | |
| Evaluation of procedures for the collection, processing, and analysis of biomolecules from low-biomass surfaces. | Kwan K, Cooper M, La Duc MT, Vaishampayan P, Stam C, Benardini JN, Scalzi G, Moissl-Eichinger C, Venkateswaran K. | Appl Environ Microbiol | 10.1128/aem.02978-10 | 2011 | |
| A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways. | Atashgahi S, Hornung B, van der Waals MJ, da Rocha UN, Hugenholtz F, Nijsse B, Molenaar D, van Spanning R, Stams AJM, Gerritse J, Smidt H. | Sci Rep | 10.1038/s41598-018-22617-x | 2018 | |
| Methods for extracting biochemical information from bacterial Raman spectra: an explorative study on Cupriavidus metallidurans. | De Gelder J, De Gussem K, Vandenabeele P, De Vos P, Moens L | Anal Chim Acta | 10.1016/j.aca.2006.12.050 | 2007 | |
| Taxonomy of the genus Cupriavidus: a tale of lost and found. | Vandamme P, Coenye T | Int J Syst Evol Microbiol | 10.1099/ijs.0.63247-0 | 2004 | |
| Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend. | Goris J, De Vos P, Coenye T, Hoste B, Janssens D, Brim H, Diels L, Mergeay M, Kersters K, Vandamme P | Int J Syst Evol Microbiol | 10.1099/00207713-51-5-1773 | 2001 |
| #1235 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2839 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40692 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68382 | Automatically annotated from API zym . |
| #120919 | Collection of Institut Pasteur ; Curators of the CIP; CIP 107179 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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