Burkholderia contaminans (DSM 22706, CCUG 55526, LMG 23361)

Name: Burkholderia contaminans (DSM 22706, CCUG 55526, LMG 23361)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1989

Type strain

Strain Designation J2956

Culture col. no. DSM 22706 CCUG 55526 LMG 23361 J2956

NCBI tax ID(s) 1334628 488447

Special Collections DSMZ CCUG Literature strains

History <- CCUG <- E. Vanlaere, LMG <- P. Vandamme, LMG <- J. Govan, Univ. Edinburgh, UK <- E. Berriatua

Links

Burkholderia contaminans J2956 is an aerobe, Gram-negative, rod-shaped human pathogen that has a yellow pigmentation and was isolated from milk of a sheep with mastitis.

Gram-negative rod-shaped pigmented aerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28924

CCUG 55526,LMG 23361,DSM 22706

@ref 20215

Last LPSN update 2026-02-09 11:18:13

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Burkholderia

Species Burkholderia contaminans

Full scientific name Burkholderia contaminans Vanlaere et al. 2009

BacDive ID	Other strains from **Burkholderia contaminans** (7)	Type strain
147870	B. contaminans CCUG 34411, LMG 16227
154547	B. contaminans CCUG 54369
155656	B. contaminans CCUG 58711
155657	B. contaminans CCUG 58713
155695	B. contaminans CCUG 59019
155759	B. contaminans CCUG 59223
155899	B. contaminans CCUG 59607

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
23366	negative	rod-shaped
125439	negative		95.9
125438	negative		97.5

Colony morphology

23366

Colony colormetallic sheen

Pigmentation

@ref	Production	Color
23366		yellow

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16476	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16476	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16476	positive	growth	28
23366	positive	growth	30-42
60633	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23366	aerobe
60633	aerobe
125438	aerobe	91.292
125439	aerobe	97

Spore formation

@ref	Spore formation	Confidence
23366
125439		95

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23366	17128 ChEBI	adipate	+	assimilation
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
23366	16947 ChEBI	citrate	+	assimilation
23366	8391 ChEBI	D-gluconate	+	assimilation
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
23366	16899 ChEBI	D-mannitol	+	assimilation
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
23366	16024 ChEBI	D-mannose	+	assimilation
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
23366	27689 ChEBI	decanoate	+	assimilation
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
23366	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
23366	17234 ChEBI	glucose	+	assimilation
23366	17234 ChEBI	glucose	+	builds acid from
23366	30849 ChEBI	L-arabinose	+	assimilation
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
23366	15589 ChEBI	L-malate	+	assimilation
23366	17716 ChEBI	lactose	+	builds acid from
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
23366	17306 ChEBI	maltose	-	assimilation
23366	17306 ChEBI	maltose	+	builds acid from
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
23366	506227 ChEBI	N-acetylglucosamine	+	assimilation
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
23366	17632 ChEBI	nitrate	+/-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
23366	18401 ChEBI	phenylacetate	+	assimilation
23366	15963 ChEBI	ribitol	+	builds acid from
23366	17992 ChEBI	sucrose	+	builds acid from
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
23366	18222 ChEBI	xylose	+	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
23366	arginine dihydrolase	-	3.5.3.6
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
23366	beta-galactosidase	+	3.2.1.23
23366	beta-galactosidase	+/-	3.2.1.23
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
16476	catalase	+	1.11.1.6
23366	cytochrome oxidase	+	1.9.3.1
16476	cytochrome-c oxidase	+	1.9.3.1
68369	gelatinase	+		from API 20NE
23366	lysine decarboxylase	+	4.1.1.18
23366	ornithine decarboxylase	-	4.1.1.17
23366	ornithine decarboxylase	+/-	4.1.1.17
23366	tryptophanase	-	4.1.99.1
23366	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
16476	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	+	+	+	+	-
16476	-	-	+	-	-	+	+	+	+	+	+	+	-	-	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body Product	#Fluids	#Milk

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
16476	milk of a sheep with mastitis	Spain	ESP	Europe
23366	milk of a sheep with mastitis during an outbreak in 1999-2000
60633	Sheep milk,mastitis	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence JX986975 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	564
Soil Samples	1055
Animal Samples	1930
Plant Samples	1505
Total Samples	5054

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
16476			2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2963382v1 assembly for Burkholderia contaminans LMG 23361	complete	GCA_029633825	488447.330	8119584841	488447	97.34
66792	ASM98707v1 assembly for Burkholderia contaminans LMG 23361	contig	GCA_000987075	1334628.9	2681812996	1334628	75.23
66792	ASM175838v2 assembly for Burkholderia contaminans LMG 23361	contig	GCA_001758385	488447.10	2916563313	488447	74.22

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Burkholderia contaminans strain LMG 23361 16S ribosomal RNA gene, partial sequence	JX986975	1485	488447
16476	Burkholderia sp. MS14 16S ribosomal RNA gene, partial sequence	EU938697	1455	557777
124043	Burkholderia contaminans strain LMG 23361 16S ribosomal RNA gene, partial sequence.	MW198159	601	488447

GC content

@ref	GC-content (mol%)
16476	67
23366	67.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Burkholderia contaminans LMG 23361
NCBI: GCA_029633825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.00	no
125439	motility	BacteriaNetⓘ	yes	76.50	no
125439	gram_stain	BacteriaNetⓘ	negative	95.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia contaminans LMG 23361
NCBI: GCA_029633825.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	yes
125438	anaerobic	anaerobicⓘ	no	97.88	no
125438	aerobic	aerobicⓘ	yes	91.29	yes
125438	spore-forming	spore-formingⓘ	no	82.70	yes
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	83.27	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Screening of natural phenazine producers for electroactivity in bioelectrochemical systems.	Franco A, Elbahnasy M, Rosenbaum MA.	Microb Biotechnol	10.1111/1751-7915.14199	2023
	Anti-Aflatoxigenic Burkholderia contaminans BC11-1 Exhibits Mycotoxin Detoxification, Phosphate Solubilization, and Cytokinin Production.	Hua L, Ye P, Li X, Xu H, Lin F.	Microorganisms	10.3390/microorganisms12091754	2024
	Isolation of cadmium-resistance and siderophore-producing endophytic bacteria and their potential use for soil cadmium remediation.	Li Y, Wei S, Chen X, Dong Y, Zeng M, Yan C, Hou L, Jiao R.	Heliyon	10.1016/j.heliyon.2023.e17661	2023
Genetics	Distribution, characterization, and evolution of heavy metal resistance genes and Tn7-like associated heavy metal resistance Gene Island of Burkholderia.	Lan Y, Liu M, Song Y, Cao Y, Li F, Luo D, Qiao D.	Front Microbiol	10.3389/fmicb.2023.1252127	2023
Genetics	Genome sequencing of Burkholderia contaminans LTEB11 reveals a lipolytic arsenal of biotechnological interest.	Alnoch RC, Cardoso RLA, Guizelini D, Balsanelli E, Tadra-Sfeir MZ, de Oliveira Pedrosa F, Sassaki GL, Cruz LM, Mitchell DA, de Souza EM, Krieger N, Muller-Santos M.	Braz J Microbiol	10.1007/s42770-019-00076-4	2019
	High-Quality Draft Genome Sequence of Burkholderia contaminans CH-1, a Gram-Negative Bacterium That Metabolizes 2-Azahypoxanthine, a Plant Growth-Regulating Compound.	Choi JH, Sugiura H, Moriuchi R, Kawagishi H, Dohra H.	Genome Announc	10.1128/genomea.01148-17	2017
	Engineering Pseudomonas aeruginosa for (R)-3-hydroxydecanoic acid production.	Wang S, Yu H, Zhu K.	AMB Express	10.1186/s13568-025-01880-y	2025
Genetics	Microbial isolation and characterization from two flex lines from the urine processor assembly onboard the international space station.	Nguyen HN, Sharp GM, Stahl-Rommel S, Velez Justiniano YA, Castro CL, Nelman-Gonzalez M, O'Rourke A, Lee MD, Williamson J, McCool C, Crucian B, Clark KW, Jain M, Castro-Wallace SL.	Biofilm	10.1016/j.bioflm.2023.100108	2023
	Production optimization, stability and oil emulsifying potential of biosurfactants from selected bacteria isolated from oil-contaminated sites.	Ali F, Das S, Hossain TJ, Chowdhury SI, Zedny SA, Das T, Ahmed Chowdhury MN, Uddin MS.	R Soc Open Sci	10.1098/rsos.211003	2021
Genetics	Comparative Genome Analyses Provide Insight into the Antimicrobial Activity of Endophytic Burkholderia.	Jia J, Lu SE.	Microorganisms	10.3390/microorganisms12010100	2024
	Metabolic Footprints of Burkholderia Sensu Lato Rhizosphere Bacteria Active against Maize Fusarium Pathogens.	Barrera-Galicia GC, Peniche-Pavia HA, Pena-Cabriales JJ, Covarrubias SA, Vera-Nunez JA, Delano-Frier JP.	Microorganisms	10.3390/microorganisms9102061	2021
Biotechnology	Boza, a natural source of probiotic lactic acid bacteria.	Todorov SD, Botes M, Guigas C, Schillinger U, Wiid I, Wachsman MB, Holzapfel WH, Dicks LM.	J Appl Microbiol	10.1111/j.1365-2672.2007.03558.x	2008
	Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis.	Nunvar J, Kalferstova L, Bloodworth RA, Kolar M, Degrossi J, Lubovich S, Cardona ST, Drevinek P.	PLoS One	10.1371/journal.pone.0160975	2016
	Factors affecting the adsorption of Lactobacillus plantarum bacteriocin bacST8KF to Enterococcus faecalis and Listeria innocua	TODOROV SD, POWELL JE, MEINCKEN M, WITTHUHN RC, DICKS LMT.	International journal of dairy technology.	10.1111/j.1471-0307.2007.00327.x	2007
Metabolism	Parameters affecting the adsorption of plantaricin 423, a bacteriocin produced by Lactobacillus plantarum 423 isolated from sorghum beer.	Todorov SD, Dicks LM.	Biotechnol J	10.1002/biot.200500026	2006
	Effect of beta-Lactamase inhibitors on in vitro activity of beta-Lactam antibiotics against Burkholderia cepacia complex species.	Everaert A, Coenye T.	Antimicrob Resist Infect Control	10.1186/s13756-016-0142-3	2016
	Interactions of meat-associated bacteriocin-producing Lactobacilli with Listeria innocua under stringent sausage fermentation conditions.	Leroy F, Lievens K, De Vuyst L.	J Food Prot	10.4315/0362-028x-68.10.2078	2005
Metabolism	Partial characterization of bacteriocins produced by environmental strain Enterococcus faecium EK13.	Marekova M, Laukova A, DeVuyst L, Skaugen M, Nes IF.	J Appl Microbiol	10.1046/j.1365-2672.2003.01861.x	2003
	Decarboxylase-positive Enterococcus faecium strains isolated from rabbit meat and their sensitivity to enterocins.	Laukova A, Szaboova R, Pleva P, Bunkova L, Chrastinova L.	Food Sci Nutr	10.1002/fsn3.361	2017
Pathogenicity	Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection.	Silva IN, Santos PM, Santos MR, Zlosnik JE, Speert DP, Buskirk SW, Bruger EL, Waters CM, Cooper VS, Moreira LM.	mSystems	10.1128/msystems.00029-16	2016
Pathogenicity	Investigating the Role of the Host Multidrug Resistance Associated Protein Transporter Family in Burkholderia cepacia Complex Pathogenicity Using a Caenorhabditis elegans Infection Model.	Tedesco P, Visone M, Parrilli E, Tutino ML, Perrin E, Maida I, Fani R, Ballestriero F, Santos R, Pinilla C, Di Schiavi E, Tegos G, de Pascale D.	PLoS One	10.1371/journal.pone.0142883	2015
	Modeling bacteriocin resistance and inactivation of Listeria innocua LMG 13568 by Lactobacillus sakei CTC 494 under sausage fermentation conditions.	Leroy F, Lievens K, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.71.11.7567-7570.2005	2005
Pathogenicity	Design, Synthesis and Evaluation of Novel Phthalimide Derivatives as in Vitro Anti-Microbial, Anti-Oxidant and Anti-Inflammatory Agents.	Lamie PF, Phillopes JN, El-Gendy AO, Rarova L, Gruz J.	Molecules	10.3390/molecules200916620	2015
Metabolism	A combined model to predict the functionality of the bacteriocin-producing Lactobacillus sakei strain CTC 494.	Leroy F, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.69.2.1093-1099.2003	2003
Metabolism	Growth of the bacteriocin-producing Lactobacillus sakei strain CTC 494 in MRS broth is strongly reduced due to nutrient exhaustion: a nutrient depletion model for the growth of lactic acid bacteria.	Leroy F, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.67.10.4407-4413.2001	2001
Pathogenicity	The curing agent sodium nitrite, used in the production of fermented sausages, is less inhibiting to the bacteriocin-producing meat starter culture Lactobacillus curvatus LTH 1174 under anaerobic conditions.	Verluyten J, Messens W, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.69.7.3833-3839.2003	2003
	The presence of salt and a curing agent reduces bacteriocin production by Lactobacillus sakei CTC 494, a potential starter culture for sausage fermentation.	Leroy F, de Vuyst L.	Appl Environ Microbiol	10.1128/aem.65.12.5350-5356.1999	1999
Metabolism	Influence of complex nutrient source on growth of and curvacin a production by sausage isolate Lactobacillus curvatus LTH 1174.	Verluyten J, Leroy F, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.70.9.5081-5088.2004	2004
Pathogenicity	Effects of different spices used in production of fermented sausages on growth of and curvacin A production by Lactobacillus curvatus LTH 1174.	Verluyten J, Leroy F, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.70.8.4807-4813.2004	2004
Pathogenicity	Sodium chloride reduces production of curvacin A, a bacteriocin produced by Lactobacillus curvatus strain LTH 1174, originating from fermented sausage.	Verluyten J, Messens W, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.70.4.2271-2278.2004	2004
Pathogenicity	Temperature and pH conditions that prevail during fermentation of sausages are optimal for production of the antilisterial bacteriocin sakacin K.	Leroy F, de Vuyst L.	Appl Environ Microbiol	10.1128/aem.65.3.974-981.1999	1999
Phylogeny	Potential of Novel Sequence Type of Burkholderia cenocepacia for Biological Control of Root Rot of Maize (Zea mays L.) Caused by Fusarium temperatum.	Tagele SB, Kim SW, Lee HG, Lee YS	Int J Mol Sci	10.3390/ijms20051005	2019
Genetics	Improved High-Quality Draft Genome Sequence and Annotation of Burkholderia contaminans LMG 23361(T).	Jung JY, Ahn Y, Kweon O, LiPuma JJ, Hussong D, Marasa BS, Cerniglia CE	Genome Announc	10.1128/genomeA.00245-17	2017
Genetics	Draft Genome Sequences of Burkholderia contaminans, a Burkholderia cepacia Complex Species That Is Increasingly Recovered from Cystic Fibrosis Patients.	Bloodworth RA, Selin C, Lopez De Volder MA, Drevinek P, Galanternik L, Degrossi J, Cardona ST	Genome Announc	10.1128/genomeA.00766-15	2015
Phylogeny	Burkholderia insecticola sp. nov., a gut symbiotic bacterium of the bean bug Riptortus pedestris.	Takeshita K, Tamaki H, Ohbayashi T, Meng XY, Sone T, Mitani Y, Peeters C, Kikuchi Y, Vandamme P.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002848	2018
Phylogeny	Carnobacterium antarcticum sp. nov., a psychrotolerant, alkaliphilic bacterium isolated from sandy soil in Antarctica.	Zhu S, Lin D, Xiong S, Wang X, Xue Z, Dong B, Shen X, Ma X, Chen J, Yang J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002727	2018
Phylogeny	Burkholderia megalochromosomata sp. nov., isolated from grassland soil.	Baek I, Seo B, Lee I, Lee K, Park SC, Yi H, Chun J.	Int J Syst Evol Microbiol	10.1099/ijs.0.000046	2015
Phylogeny	Burkholderia jiangsuensis sp. nov., a methyl parathion degrading bacterium, isolated from methyl parathion contaminated soil.	Liu XY, Li CX, Luo XJ, Lai QL, Xu JH.	Int J Syst Evol Microbiol	10.1099/ijs.0.064444-0	2014
Phylogeny	Burkholderia soli sp. nov., isolated from soil cultivated with Korean ginseng.	Yoo SH, Kim BY, Weon HY, Kwon SW, Go SJ, Stackebrandt E.	Int J Syst Evol Microbiol	10.1099/ijs.0.64471-0	2007
Phylogeny	Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.	Vanlaere E, Baldwin A, Gevers D, Henry D, De Brandt E, LiPuma JJ, Mahenthiralingam E, Speert DP, Dowson C, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.001123-0	2009

References

#16476	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22706
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23366	Elke Vanlaere, Adam Baldwin, Dirk Gevers, Deborah Henry, Evie De Brandt, John J. LiPuma, Eshwar Mahenthiralingam, David P. Speert, Chris Dowson, Peter Vandamme: Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.. IJSEM 59: 102 - 111 2009 ( DOI 10.1099/ijs.0.001123-0 , PubMed 19126732 )
#60633	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55526
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Burkholderia contaminans (DSM 22706, CCUG 55526, LMG 23361)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_029633825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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