Name: Paraburkholderia sabiae DSM 23623
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1988

Type strain:

Species: Paraburkholderia sabiae

Culture col. no.: DSM 23623, BCRC 17587, LMG 24235, CCUG 58093, BR Br3407, BR 3407

Strain history: <- LMG <- P. Vandamme, University Ghent, Laboratory of Microbiology <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan <- S. M. de Faria, EMBRAPA-Agrobiologia Brazil; Br3407

NCBI tax ID(s): 273251 (species)

SI-ID 307396

BCRC 17587, CCRC 17587, LMG 24235, CCUG 58093, DSM 23623

Section

Paraburkholderia sabiae DSM 23623 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from root nodule of Mimosa caesalpiniifolia.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia sabiae**
	Full Scientific Name (LPSN)	Paraburkholderia sabiae (Chen et al. 2008) Sawana et al. 2015

Synonym

Burkholderia sabiae

Information on morphological and physiological properties Morphology

[Ref.: #32630]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.961

[Ref.: #32630]	Cell length	0.6-1.5 µm

[Ref.: #32630]	Cell width	0.4-0.6 µm

[Ref.: #32630]	Cell shape	rod-shaped

[Ref.: #17184]

Type of hemolysis

gamma

[Ref.: #32630]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17184]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17184]

Culture medium growth

[Ref.: #17184]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17184]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17184]	growth	30 °C
[Ref.: #32630]	growth	28-37 °C
[Ref.: #32630]	optimum	28 °C
[Ref.: #61593]	growth	28 °C

[Ref.: #17184]	Temperature range	mesophilic
[Ref.: #32630]	Temperature range	mesophilic
[Ref.: #61593]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32630]			optimum	7
[Ref.: #32630]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32630]	Oxygen tolerance	aerobe
[Ref.: #61593]	Oxygen tolerance	aerobe

[Ref.: #32630]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

[Ref.: #32630]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #32630]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #32630]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #32630]	decanoate ChEBI	+	carbon source
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #32630]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #32630]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #32630]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #32630]	mannitol ChEBI	+	carbon source
[Ref.: #32630]	mannose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #32630]	phenylacetate ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #17184]	catalase	+	1.11.1.6
[Ref.: #32630]	catalase	+	1.11.1.6
[Ref.: #32630]	cytochrome oxidase	+	1.9.3.1
[Ref.: #17184]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #17184]	23872	+	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+	+	+	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17184]	Sample type/isolated from	root nodule of Mimosa caesalpiniifolia
[Ref.: #17184]	Host species	Mimosa caesalpiniifolia
[Ref.: #17184]	Country	Brazil
[Ref.: #17184]	Country ISO 3 Code	BRA
[Ref.: #17184]	Continent	Middle and South America

[Ref.: #61593]	Sample type/isolated from	Root nodules of Mimosa caesalpiniifolia
[Ref.: #61593]	Sampling date	2000
[Ref.: #61593]	Country	Brazil
[Ref.: #61593]	Country ISO 3 Code	BRA
[Ref.: #61593]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17184]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17184]	Burkholderia sabiae strain Br3407 16S ribosomal RNA gene, partial sequence	AY773186	1483	ENA	273251 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraburkholderia sabiae LMG 24235	GCA_904848645	contig	GenBank	273251 tax ID	*
[Ref.: #66792]	Paraburkholderia sabiae strain LMG 24235	273251.3	wgs	PATRIC	273251 tax ID	*

[Ref.: #32630]

GC-content

64.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paraburkholderia sabiae strain LMG 24235 PATRIC: 273251.5
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraburkholderia sabiae strain LMG 24235 PATRIC: 273251.3
[Ref.: #69480]	motile	yes	87.286	no
[Ref.: #69480]	gram-positive	no	97.913	yes
[Ref.: #69480]	anaerobic	no	98.494	yes
[Ref.: #69480]	halophile	no	93.899	no
[Ref.: #69480]	spore-forming	no	91.601	no
[Ref.: #69480]	glucose-util	yes	92.707	no
[Ref.: #69480]	aerobic	yes	88.717	no
[Ref.: #69480]	thermophile	no	99.554	yes
[Ref.: #69480]	flagellated	no	87.463	no
[Ref.: #69480]	glucose-ferment	no	89.864	yes

Availability in culture collections External links

[Ref.: #17184]

Culture collection no.

DSM 23623, BCRC 17587, LMG 24235, CCUG 58093, BR Br3407, BR 3407

[Ref.: #71635]

SI-ID 307396

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia.	Chen WM, de Faria SM, Chou JH, James EK, Elliott GN, Sprent JI, Bontemps C, Young JP, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.65816-0	2008	*

References

#17184

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23623

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32630

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28841 (see below)

#61593 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58093

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71635

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID307396.1 )

#28841

IJSEM 2174 2008 ( DOI 10.1099/ijs.0.65816-0 , PubMed 18768625 )

* These data were automatically processed and therefore are not curated

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Paraburkholderia sabiae strain LMG 24235

Paraburkholderia sabiae strain LMG 24235

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