Burkholderia arboris (DSM 23435, CCUG 54561, LMG 24066)

Name: Burkholderia arboris (DSM 23435, CCUG 54561, LMG 24066)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1983

Type strain

Strain Designation ES0263A, ES0263AT

Culture col. no. DSM 23435 CCUG 54561 LMG 24066 ES0263A CIP 110772 1 more

NCBI tax ID(s) 488730

Special Collections DSMZ CCUG Literature strains CIP

History DSMZ <- CCUG <- LMG <- J. J. LiPuma; ES0263A CIP <- 2014, CCUG <- 2007, LMG <- J. LiPuma, USA: strain ES0263AT

Links

Burkholderia arboris ES0263A is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Morris Arboretum.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 137149

LMG 24066,CCUG 54561,DSM 23435,CIP 110772

@ref 20215

Last LPSN update 2026-05-29 08:25:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Burkholderia

Species Burkholderia arboris

Full scientific name Burkholderia arboris Vanlaere et al. 2008

BacDive ID	Other strains from **Burkholderia arboris** (3)	Type strain
141414	B. arboris CCUG 1603, LMG 6988
154605	B. arboris CCUG 54562, LMG 24270
154606	B. arboris CCUG 54563, LMG 24269

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
23365	negative	rod-shaped
116473	negative	rod-shaped
125438	negative		97.482

Colony morphology

@ref	Type of hemolysis	Hemolysis ability
17207	beta	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17207	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
17207	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
116473	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
17207	positive	growth	30
23365	positive	growth	30-37
23365	positive	maximum	42
60235	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23365	aerobe
60235	aerobe
125439	obligate aerobe	98.589

Spore formation

@ref	Spore formation	Confidence
23365
125439		99.209

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23365	17128 ChEBI	adipate	+	growth
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
23365	16899 ChEBI	D-mannitol	+	growth
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
23365	27689 ChEBI	decanoate	+	growth
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
23365	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
23365	17234 ChEBI	glucose	+	builds acid from
23365	30849 ChEBI	L-arabinose	+	growth
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
23365	17716 ChEBI	lactose	+	builds acid from
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
23365	17306 ChEBI	maltose	+	builds acid from
23365	17306 ChEBI	maltose	+	growth
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
23365	506227 ChEBI	N-acetylglucosamine	+	growth
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
23365	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
23365	18401 ChEBI	phenylacetate	+	growth
23365	15963 ChEBI	ribitol	+	builds acid from
23365	17992 ChEBI	sucrose	+	builds acid from
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
23365	18222 ChEBI	xylose	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
23365	arginine dihydrolase	+	3.5.3.6
23365	arginine dihydrolase	-	3.5.3.6
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
23365	beta-galactosidase	+	3.2.1.23
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
17207	catalase	+	1.11.1.6
23365	cytochrome oxidase	+	1.9.3.1
17207	cytochrome-c oxidase	+	1.9.3.1
23365	gelatinase	+
68369	gelatinase	-		from API 20NE
23365	lysine decarboxylase	+	4.1.1.18
23365	ornithine decarboxylase	+	4.1.1.17
23365	tryptophanase	-	4.1.99.1
23365	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
17207	+	-	+	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree
#Environmental	#Terrestrial	#Forest

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
17207	Morris Arboretum		Philadelphia	USA	USA	North America
23365	Arboretum soil	1999
60235	Morris Arboretum	2004-06-03	Philadelphia	USA	USA	North America
116473	Morris Arboretum		Philadelphia, Pennsylvania	United States of America	USA	North America	2004-06-03

Taxonmaps

69479

Global distribution of 16S sequence AM747630 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	564
Soil Samples	1055
Animal Samples	1930
Plant Samples	1505
Total Samples	5054

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17207	2	Risk group (German classification) According to TRBA 466
116473	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM90249912v1 assembly for Burkholderia arboris	contig	GCA_902499125	488730.9	8109971123	488730	63.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17207	Burkholderia arboris partial 16S rRNA gene, type strain R-24201T	AM747630	1502		488730

GC content

23365

GC-content (mol%)67.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM90249912v1 assembly for Burkholderia arboris
BV-BRC: 488730.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.59	no
125439	gram_stain	BacteriaNetⓘ	negative	88.32	no
125439	motility	BacteriaNetⓘ	yes	72.81	no
125439	spore_formation	BacteriaNetⓘ	no	99.21	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia arboris strain LMG 24066
PATRIC: 488730.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	yes
125438	anaerobic	anaerobicⓘ	no	96.80	yes
125438	spore-forming	spore-formingⓘ	no	85.96	yes
125438	aerobic	aerobicⓘ	yes	89.88	yes
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	83.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Combined Clinical, Epidemiological, and Genome-Based Analysis Identified a Nationwide Outbreak of Burkholderia cepacia Complex Infections Caused by Contaminated Mouthwash Solutions.	Bender JK, Haller S, Pfeifer Y, Hogardt M, Hunfeld KP, Thurmer A, Zanuzdana A, Werner M, Kunz B, Eisenberger D, Pfennigwerth N, Kempf VAJ, Werner G, Eckmanns T.	Open Forum Infect Dis	10.1093/ofid/ofac114	2022
	Effect of beta-Lactamase inhibitors on in vitro activity of beta-Lactam antibiotics against Burkholderia cepacia complex species.	Everaert A, Coenye T.	Antimicrob Resist Infect Control	10.1186/s13756-016-0142-3	2016
Pathogenicity	Investigating the Role of the Host Multidrug Resistance Associated Protein Transporter Family in Burkholderia cepacia Complex Pathogenicity Using a Caenorhabditis elegans Infection Model.	Tedesco P, Visone M, Parrilli E, Tutino ML, Perrin E, Maida I, Fani R, Ballestriero F, Santos R, Pinilla C, Di Schiavi E, Tegos G, de Pascale D.	PLoS One	10.1371/journal.pone.0142883	2015
Phylogeny	Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.	Vanlaere E, Lipuma JJ, Baldwin A, Henry D, De Brandt E, Mahenthiralingam E, Speert D, Dowson C, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.65634-0	2008

References

#17207	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23435
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23365	Elke Vanlaere, John J. LiPuma, Adam Baldwin, Deborah Henry, Evie De Brandt, Eshwar Mahenthiralingam, David Speert, Chris Dowson, Peter Vandamme: Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex. IJSEM 58: 1580 - 1590 2008 ( DOI 10.1099/ijs.0.65634-0 , PubMed 18599699 )
#60235	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54561
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116473	Collection of Institut Pasteur ; Curators of the CIP; CIP 110772
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Burkholderia arboris (DSM 23435, CCUG 54561, LMG 24066)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_902499125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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