Mycetohabitans endofungorum (DSM 19003, CIP 109454, HKI 456)

Name: Mycetohabitans endofungorum (DSM 19003, CIP 109454, HKI 456)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1977

Type strain

Strain Designation HK10456-B5

Culture col. no. DSM 19003 CIP 109454 HKI 456 HK10456-B5 BSC-B5 3 more

NCBI tax ID(s) 417203

Special Collections DSMZ CIP Literature strains JMRC

History DSMZ <- L. P. Partida-Martinez; HKI 456 CIP <- 2007, L.P. Partida-Martinez, Hans Knoell Inst., Jena, Germany: strain HK10456-B5

Links

Mycetohabitans endofungorum HK10456-B5 is an aerobe, Gram-negative, motile bacterium that was isolated from fungus Rhizopus microsporus Tieghem .

Gram-negative motile ovoid-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 319365

CIP 109454,DSM 19003,LMG 24680

@ref 20215

Last LPSN update 2026-05-29 08:25:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Mycetohabitans

Species Mycetohabitans endofungorum

Full scientific name Mycetohabitans endofungorum (Partida-Martinez et al. 2007) Estrada-de Los Santos et al. 2018

Synonyms (2)

Burkholderia endofungorum
Paraburkholderia endofungorum

BacDive ID	Other strains from **Mycetohabitans endofungorum** (1)	Type strain
100246	M. endofungorum SF008693,

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31924	negative	1.6 µm	0.9 µm	ovoid-shaped
119026	negative			rod-shaped
125439	negative				98.757
125438	negative				98.5

Colony morphology

7826

Incubation period3-7 days

Pigmentation

31924

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7826	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
41972	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119026	CIP Medium 72	Medium recipe at CIP
7826	BCYE alpha agar (DSMZ Medium 585a)	Medium recipe provided by DSMZ
7826	BCYE-AGAR (DSMZ Medium 585)	Medium recipe at MediaDive	Name: BCYE-AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
7826	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7826	positive	growth	30
7826	positive	growth	28
31924	positive	growth	16-45
31924	positive	optimum	30.5
41972	positive	growth	30

Culture pH

@ref	Ability	Type	PH
31924	positive	optimum	6.25
31924	positive	growth	5.0-7.4

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31924	aerobe
119026	obligate aerobe
125439	obligate aerobe	96.724

Spore formation

@ref	Spore formation	Confidence
125439		99.863
125438		90.417

Compound production

7826

Compoundrhizoxin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31924	NaCl	positive	growth	0-3 %
31924	NaCl	positive	optimum	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
119026	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
119026	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
119026	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
7826	catalase	-	1.11.1.6
31924	catalase	+	1.11.1.6
119026	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31924	cytochrome oxidase	+	1.9.3.1
7826	cytochrome-c oxidase	-	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119026	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119026	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119026	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7826	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	not determinedn.d.
7826	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-	+/-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fungi

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Isolation date
7826	fungus Rhizopus microsporus Tieghem (CBS 112285)	Rhizopus microsporus	Germany	DEU	Europe
119026	Other, Fungus, Rhizopus microsporus		Mozambique	MOZ	Africa	2004

Taxonmaps

69479

Global distribution of 16S sequence AM420302 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	1257
Soil Samples	4868
Animal Samples	2903
Plant Samples	2896
Total Samples	11924

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7826	1	Risk group (German classification) According to TRBA 466
119026	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM292704v1 assembly for Mycetohabitans endofungorum HKI456	contig	GCA_002927045	417203.3	2708743152	417203	62.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7826	Burkholderia endofungorum 16S rRNA gene, type strain HKI 456T	AM420302	1527		417203

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM292704v1 assembly for Mycetohabitans endofungorum HKI456
NCBI: GCA_002927045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.72	no
125439	gram_stain	BacteriaNetⓘ	negative	98.76	no
125439	motility	BacteriaNetⓘ	yes	80.36	no
125439	spore_formation	BacteriaNetⓘ	no	99.86	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraburkholderia endofungorum strain HKI456
PATRIC: 417203.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	94.70	yes
125438	spore-forming	spore-formingⓘ	no	90.42	no
125438	aerobic	aerobicⓘ	yes	82.93	yes
125438	thermophilic	thermophileⓘ	no	90.79	yes
125438	flagellated	motile2+ⓘ	no	53.73	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Transcription activator-like effectors from endosymbiotic bacteria control the reproduction of their fungal host.	Richter I, Uzum Z, Wein P, Molloy EM, Moebius N, Stinear TP, Pidot SJ, Hertweck C.	mBio	10.1128/mbio.01824-23	2023
Metabolism	Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism.	Lastovetsky OA, Krasnovsky LD, Qin X, Gaspar ML, Gryganskyi AP, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Pawlowska TE.	mBio	10.1128/mbio.02088-20	2020
Phylogeny	Burkholderia rhizoxinica sp. nov. and Burkholderia endofungorum sp. nov., bacterial endosymbionts of the plant-pathogenic fungus Rhizopus microsporus.	Partida-Martinez LP, Groth I, Schmitt I, Richter W, Roth M, Hertweck C	Int J Syst Evol Microbiol	10.1099/ijs.0.64660-0	2007

References

#7826	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19003
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#28181	IJSEM 2583 2007 ( DOI 10.1099/ijs.0.64660-0 , PubMed 17978222 )
#31924	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28181
#41972	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119026	Collection of Institut Pasteur ; Curators of the CIP; CIP 109454
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycetohabitans endofungorum (DSM 19003, CIP 109454, HKI 456)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002927045

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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