Trinickia soli (DSM 18235, CIP 109628, KACC 11589)

Name: Trinickia soli (DSM 18235, CIP 109628, KACC 11589)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1970

Type strain

Strain Designation GP25-8

Culture col. no. DSM 18235 CIP 109628 KACC 11589 LMG 24076 CCUG 54942 2 more

NCBI tax ID(s) 380675

Special Collections DSMZ CCUG JCM CIP Literature strains

History DSMZ <- S.-W. Kwon; GP25-8 <- H.-Y. Weon JCM <-- KACC 11589 <-- S.-W. Kwon GP25-8. CIP <- 2007, DSMZ <- S.W. Kwon, KACC, Korea: strain GP25-8 <- H.Y. Weon, Nat. Inst. Agric. Sci. Technol., Suwon, Korea

Links

Trinickia soli GP25-8 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil cultivated with Korea ginseng.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297152

DSM 18235,KACC 11589,LMG 24076,CIP 109628,CCUG 54942

@ref 20215

Last LPSN update 2026-05-29 08:25:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Trinickia

Species Trinickia soli

Full scientific name Trinickia soli (Yoo et al. 2007) Estrada-de Los Santos et al. 2018

Synonyms (2)

Paraburkholderia soli
Burkholderia soli

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31835	negative	2.75 µm	0.625 µm	rod-shaped
122667	negative			rod-shaped
125438	negative				97.494

Colony morphology

60402

Incubation period2 days

Pigmentation

31835

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7448	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
41984	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
122667	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7448	positive	growth	28
31835	positive	growth	10-40
31835	positive	optimum	28
41984	positive	growth	30
60402	positive	growth	30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
31835	positive	optimum	06-07
31835	positive	growth	04-08	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31835	aerobe
60402	aerobe
122667	obligate aerobe
125439	obligate aerobe	98.148

Spore formation

@ref	Spore formation	Confidence
125439		98.838

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31835	NaCl	positive	growth	0-2 %
31835	NaCl	positive	optimum	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31835	37054 ChEBI	3-hydroxybutyrate	+	carbon source
31835	16449 ChEBI	alanine	+	carbon source
31835	22599 ChEBI	arabinose	+	carbon source
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
31835	33984 ChEBI	fucose	+	carbon source
31835	17234 ChEBI	glucose	+	carbon source
31835	28087 ChEBI	glycogen	+	carbon source
31835	27570 ChEBI	histidine	+	carbon source
31835	17240 ChEBI	itaconate	+	carbon source
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
31835	24996 ChEBI	lactate	+	carbon source
31835	29864 ChEBI	mannitol	+	carbon source
31835	17268 ChEBI	myo-inositol	+	carbon source
31835	506227 ChEBI	N-acetylglucosamine	+	carbon source
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
122667	17632 ChEBI	nitrate	+	reduction
122667	16301 ChEBI	nitrite	-	reduction
31835	26271 ChEBI	proline	+	carbon source
31835	17272 ChEBI	propionate	+	carbon source
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
31835	33942 ChEBI	ribose	+	carbon source
31835	30911 ChEBI	sorbitol	+	carbon source
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
122667	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	-	3.2.1.23	from API zym
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	-	3.2.1.21	from API zym
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
31835	catalase	+	1.11.1.6
122667	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31835	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68382	leucine arylamidase	+	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122667	oxidase	+
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	+	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
122667	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	Entner Doudoroff pathway	100	10 of 10
66794	ribulose monophosphate pathway	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	glycine betaine biosynthesis	100	5 of 5
66794	gallate degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	glycogen metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	quinate degradation	100	2 of 2
66794	pentose phosphate pathway	100	11 of 11
66794	starch degradation	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	butanoate fermentation	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ethanol fermentation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	adipate degradation	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	citric acid cycle	92.86	13 of 14
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	lipid A biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	sulfate reduction	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	tryptophan metabolism	84.21	32 of 38
66794	NAD metabolism	83.33	15 of 18
66794	pyrimidine metabolism	82.22	37 of 45
66794	vitamin B6 metabolism	81.82	9 of 11
66794	proline metabolism	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	myo-inositol biosynthesis	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	vitamin K metabolism	80	4 of 5
66794	degradation of sugar acids	80	20 of 25
66794	histidine metabolism	79.31	23 of 29
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	lysine metabolism	76.19	32 of 42
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	cyclohexanol degradation	75	3 of 4
66794	arginine metabolism	75	18 of 24
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of pentoses	71.43	20 of 28
66794	glutathione metabolism	71.43	10 of 14
66794	tyrosine metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	oxidative phosphorylation	69.23	63 of 91
66794	lipid metabolism	67.74	21 of 31
66794	methane metabolism	66.67	2 of 3
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	cyanate degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	heme metabolism	64.29	9 of 14
66794	metabolism of disaccharids	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	degradation of sugar alcohols	62.5	10 of 16
66794	carnitine metabolism	62.5	5 of 8
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	polyamine pathway	60.87	14 of 23
66794	phenol degradation	60	12 of 20
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of hexoses	55.56	10 of 18
66794	allantoin degradation	55.56	5 of 9
66794	coenzyme M biosynthesis	50	5 of 10
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	ascorbate metabolism	50	11 of 22
66794	phenylmercury acetate degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	cholesterol biosynthesis	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	vitamin B12 metabolism	44.12	15 of 34
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	creatinine degradation	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	carotenoid biosynthesis	31.82	7 of 22
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	chlorophyll metabolism	27.78	5 of 18
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122667	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
7448	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7448	soil cultivated with Korea ginseng		Republic of Korea	KOR	Asia
60402	Soil cultivated with Korean ginseng		Republic of Korea	KOR	Asia
67770	Soil cultivated with Korean ginseng in the Eumseong region of Korea
122667	Environment, Soil cultivated with Korean ginseng	Eumseong region	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7448	1	Risk group (German classification) According to TRBA 466
122667	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	LMG 24076 assembly for Trinickia soli LMG 24076	contig	GCA_902859815	380675.5	8065767652	380675	66.47
66792	ASM287985v1 assembly for Trinickia soli GP25-8	contig	GCA_002879855	380675.3	2889805101	380675	58.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7448	Burkholderia soli strain GP25-8 16S ribosomal RNA gene, partial sequence	DQ465451	1480		380675

GC content

@ref	GC-content (mol%)	Method
7448	65
31835	64.9
67770	64.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: LMG 24076 assembly for Trinickia soli LMG 24076
NCBI: GCA_902859815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.15	no
125439	gram_stain	BacteriaNetⓘ	negative	84.56	no
125439	motility	BacteriaNetⓘ	yes	48.78	no
125439	spore_formation	BacteriaNetⓘ	no	98.84	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Trinickia soli strain LMG 24076
PATRIC: 380675.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.49	yes
125438	anaerobic	anaerobicⓘ	no	97.42	no
125438	spore-forming	spore-formingⓘ	no	88.35	no
125438	aerobic	aerobicⓘ	yes	89.91	no
125438	thermophilic	thermophileⓘ	no	98.46	yes
125438	flagellated	motile2+ⓘ	yes	86.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Trinickia diaoshuihuensis sp. nov., a plant growth promoting bacterium isolated from soil.	Fu Y, Yan R, Liu D, Jiang S, Cui L, Guo X, Wang X, Zhang J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003155	2018
Phylogeny	Burkholderia dabaoshanensis sp. nov., a heavy-metal-tolerant bacteria isolated from Dabaoshan mining area soil in China.	Zhu H, Guo J, Chen M, Feng G, Yao Q	PLoS One	10.1371/journal.pone.0050225	2012
Phylogeny	Burkholderia symbiotica sp. nov., isolated from root nodules of Mimosa spp. native to north-east Brazil.	Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.037408-0	2011
Phylogeny	Burkholderia soli sp. nov., isolated from soil cultivated with Korean ginseng.	Yoo SH, Kim BY, Weon HY, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64471-0	2007

References

#7448	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18235
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28101	IJSEM 122 2007 ( DOI 10.1099/ijs.0.64471-0 , PubMed 17220453 )
#31835	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28101
#41984	; Curators of the CIP;
#60402	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54942
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#122667	Collection of Institut Pasteur ; Curators of the CIP; CIP 109628
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Trinickia soli (DSM 18235, CIP 109628, KACC 11589)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_902859815

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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