Name: Paraburkholderia ferrariae FeGl01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1969

Type strain:

Species: Paraburkholderia ferrariae

Strain Designation: FeGl01, FeGI01

Culture col. no.: CCUG 54295, DSM 18251, CECT 7171, LMG 23612, CIP 109391

Strain history: CIP <- 2006, CECT <- E. Velazquez: strain FeGI01

NCBI tax ID(s): 386056 (species)

SI-ID 291553

LMG 23612, CECT 7171, DSM 18251, CIP 109391, CCUG 54295, NBRC 106233

Section

Paraburkholderia ferrariae FeGl01 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from material from iron mine.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia ferrariae**
	Full Scientific Name (LPSN)	Paraburkholderia ferrariae (Valverde et al. 2006) Sawana et al. 2015

Synonym

Burkholderia ferrariae

Information on morphological and physiological properties Morphology

[Ref.: #119331]	Gram stain	negative

[Ref.: #119331]	Cell shape	rod-shaped

[Ref.: #119331]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7459]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7459]

Culture medium growth

[Ref.: #7459]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7459]

Culture medium composition

expand / minimize

[Ref.: #41974]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #41974]

Culture medium growth

[Ref.: #41974]

Culture medium composition

expand / minimize

[Ref.: #119331]

Culture medium

CIP Medium 328

[Ref.: #119331]

Culture medium growth

[Ref.: #119331]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7459]	growth	28 °C
[Ref.: #41974]	growth	30 °C
[Ref.: #60127]	growth	30 °C

[Ref.: #7459]	Temperature range	mesophilic
[Ref.: #41974]	Temperature range	mesophilic
[Ref.: #60127]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60127]	Oxygen tolerance	aerobe
[Ref.: #119331]	Oxygen tolerance	obligate aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #119331]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #119331]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119331]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119331]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119331]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119331]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #7459]	24504	+	-	-	-	-	-	-	+/-	+	+	+	+	+	+/-	+	+	+	+	+	+	-
[Ref.: #60127]	8417	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	+	+	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #60127]	4342	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-
[Ref.: #119331]	11834	-	+	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7459]	Sample type/isolated from	material from iron mine
[Ref.: #7459]	Country	Brazil
[Ref.: #7459]	Country ISO 3 Code	BRA
[Ref.: #7459]	Continent	Middle and South America

[Ref.: #60127]	Sample type/isolated from	High-phosphorous iron ore
[Ref.: #60127]	Geographic location (country and/or sea, region)	Minas Gerais State,Jangada mine
[Ref.: #60127]	Country	Brazil
[Ref.: #60127]	Country ISO 3 Code	BRA
[Ref.: #60127]	Continent	Middle and South America

[Ref.: #119331]	Sample type/isolated from	Iron ore
[Ref.: #119331]	Country	Brazil
[Ref.: #119331]	Country ISO 3 Code	BRA
[Ref.: #119331]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Engineered

#Other

#Mine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB537487 (>99% sequence identity) for Paraburkholderia from Microbeatlas

Aquatic Samples	59
Soil Samples	201
Animal Samples	722
Plant Samples	44
Total Samples	1026

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7459]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119331]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7459]	Burkholderia ferrariae strain FeGl01 16S ribosomal RNA gene, partial sequence	DQ514537	1523	ENA	386056 tax ID
[Ref.: #20218]	Burkholderia ferrariae strain LMG 23612 16S ribosomal RNA gene, partial sequence	HQ849080	1124	ENA	386056 tax ID	*
[Ref.: #20218]	Burkholderia ferrariae gene for 16S ribosomal RNA, partial sequence, strain: NBRC 106233	AB537487	1456	ENA	386056 tax ID	*

Availability in culture collections External links

[Ref.: #7459]

Culture collection no.

CCUG 54295, DSM 18251, CECT 7171, LMG 23612, CIP 109391

[Ref.: #71614]

SI-ID 291553

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia ferrariae sp. nov., isolated from an iron ore in Brazil.	Valverde A, Delvasto P, Peix A, Velazquez E, Santa-Regina I, Ballester A, Rodriguez-Barrueco C, Garcia-Balboa C, Igual JM	Int J Syst Evol Microbiol	10.1099/ijs.0.64498-0	2006	*

References

#7459

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18251

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41974 ; Curators of the CIP;
#60127 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54295

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71614

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291553.1 )

#119331 Collection of Institut Pasteur ; Curators of the CIP; CIP 109391
* These data were automatically processed and therefore are not curated

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